Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BXP21_RS07015 Genome accession   NZ_CP024071
Coordinates   1429826..1430293 (+) Length   155 a.a.
NCBI ID   WP_000856669.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7.13_R1a     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424826..1435293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BXP21_RS06995 (BXP21_06990) dnaK 1424938..1426800 (+) 1863 WP_000520987.1 molecular chaperone DnaK -
  BXP21_RS07000 (BXP21_06995) - 1427030..1427602 (-) 573 WP_000848408.1 hypothetical protein -
  BXP21_RS07005 (BXP21_07000) - 1427716..1428633 (+) 918 WP_013195934.1 O-acetylserine-dependent cystathionine beta-synthase -
  BXP21_RS07010 (BXP21_07005) - 1428654..1429796 (+) 1143 WP_001242884.1 cystathionine gamma-synthase -
  BXP21_RS07015 (BXP21_07010) luxS 1429826..1430293 (+) 468 WP_000856669.1 S-ribosylhomocysteine lyase Regulator
  BXP21_RS07020 (BXP21_07015) - 1430442..1432187 (+) 1746 WP_001228615.1 bifunctional metallophosphatase/5'-nucleotidase -
  BXP21_RS07025 (BXP21_07020) tlpB 1432391..1434088 (+) 1698 WP_000971615.1 methyl-accepting chemotaxis protein TlpB -
  BXP21_RS07030 (BXP21_07025) - 1434120..1434902 (+) 783 WP_000921993.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17712.08 Da        Isoelectric Point: 6.1380

>NTDB_id=209993 BXP21_RS07015 WP_000856669.1 1429826..1430293(+) (luxS) [Helicobacter pylori strain 7.13_R1a]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSP
MGCQTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQDLARAFLDKRDEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=209993 BXP21_RS07015 WP_000856669.1 1429826..1430293(+) (luxS) [Helicobacter pylori strain 7.13_R1a]
ATGAAAACACCAAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTTAAAGCCCCTTATGTGCGTGTAGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAACAGCCCAACCAAGATCACATGGACA
TGCCTAGCCTACACTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACGGAGGTTTTAGAGGTTTTAGAAAAGAC
CATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGGATTTAGCGCGTGCTTTTTTAGACAAACGCGATGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

90.968

0.387

Multiple sequence alignment