Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BI317_RS02870 Genome accession   NZ_CP018731
Coordinates   653195..654715 (-) Length   506 a.a.
NCBI ID   WP_074056492.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. gardneri strain ICMP 7383     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 648195..659715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI317_RS02850 (BI317_02850) - 648558..649682 (+) 1125 WP_074056491.1 acyl-CoA desaturase -
  BI317_RS02855 (BI317_02855) - 649935..651497 (-) 1563 WP_006449001.1 EAL domain-containing protein -
  BI317_RS26395 - 651882..652058 (+) 177 WP_006449000.1 hypothetical protein -
  BI317_RS02865 (BI317_02865) - 652596..653105 (-) 510 WP_187433702.1 lipocalin family protein -
  BI317_RS02870 (BI317_02870) comM 653195..654715 (-) 1521 WP_074056492.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BI317_RS02875 (BI317_02875) - 654732..655022 (-) 291 WP_074056493.1 accessory factor UbiK family protein -
  BI317_RS02880 (BI317_02880) - 655176..655550 (+) 375 WP_197970279.1 P-II family nitrogen regulator -
  BI317_RS02885 (BI317_02885) - 655976..657949 (+) 1974 WP_074056494.1 beta-N-acetylglucosaminidase domain-containing protein -
  BI317_RS02890 (BI317_02890) - 658300..658974 (-) 675 WP_074056495.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53807.61 Da        Isoelectric Point: 7.9742

>NTDB_id=209903 BI317_RS02870 WP_074056492.1 653195..654715(-) (comM) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALAEYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGTQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPHPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDTIVRYRSRISGPLLDRIDLHVEVPRLPPQALRNGN
VGEDSASVRTRVVAARVLQLARAGVPNAQLDQAQTDHHCRLRNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
VIATHHLTEAIGYRKLDRAVGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=209903 BI317_RS02870 WP_074056492.1 653195..654715(-) (comM) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTAGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAGTCGCGCGAACGCGTGCGTGCCGCGCTGC
TATGCGCACAGTTCGAATTCCCCGCGCGGCGCATCACCATCAATCTGGCGCCGGCCGATTTACCCAAGGAAGGCGGCCGT
TTCGATCTGCCGATCGCACTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGGCAGGCCCTGGCCGAGTACGAATTTCT
CGGCGAACTCGCCCTCACCGGCGAATTGCGCGGTGTCGATGGCGTGCTGCCCGCCGCCCTGGCAGCCGCGCAGGCCGGCC
GCCGCCTGATCGTGCCGCTGGCCAACGGTGCCGAGGCCGCCATCGCCGGCCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTGGAAGTCTGTGCCACGCTCAATGGCACCCAGAAGGCGCCCGCCGCCGAACTGGCGGTGCAGGCTCTCGGCGCACGCGC
CCTGCCCGACATGGCCGACGTGCGCGGCCAACCGCATGCCCGCCGCGCGCTGGAAATCGCTGCCGCTGGCGGTCACCATC
TTTTGCTGGTTGGTAGCCCTGGCTGCGGCAAGACTCTGCTTGCCTCGCGCCTGCCCGGCCTGCTGCCGGAAGCCAGTGAG
GCCGAAGCGCTGGAAACCGCTGCCATTACCTCCATCAGCGGTCGCGGACTGGATCTTGCGCGCTGGCGGCAACGCCCCTA
TCGGGCACCGCATCACACTGCCAGCGCGGTCGCCTTGGTGGGCGGCGGCACACATCCACATCCTGGCGAGATTTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAGTGGCAACGCCAAACGCTGGAAGTGCTGCGCGAACCGCTCGAA
TCGGGCCTGGTCACCATCTCACGCGCCGCGCGCAGTGTGGATTTCCCGGCAAGATTTCAATTGGTCGCCGCAATGAATCC
ATGCCCGTGCGGGTGGGCCGGCGATGGCAGTGGGCGTTGTCGTTGCAGCAGCGACACCATCGTCCGTTATCGCAGCCGGA
TCTCCGGGCCGCTGCTGGACCGCATCGATCTGCACGTCGAAGTTCCGCGCCTGCCACCGCAGGCCCTGCGCAACGGCAAC
GTCGGCGAGGACAGCGCCAGCGTGCGCACCCGCGTAGTCGCAGCACGCGTCCTGCAACTGGCACGTGCCGGCGTGCCCAA
CGCACAACTAGACCAGGCGCAAACCGATCACCACTGCCGCCTGCGCAACGACGATCAGTTGCTGCTGGAACGCGCGATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GTCATTGCCACCCACCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGCGCGGTGGGTACAGCAAGCGCGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

56.04

99.802

0.559
  comM Glaesserella parasuis strain SC1401

55.248

99.802

0.551
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.295

99.012

0.518
  comM Legionella pneumophila strain ERS1305867

52.295

99.012

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.654

100

0.468

Multiple sequence alignment