Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BJD12_RS10515 Genome accession   NZ_CP018725
Coordinates   2399494..2401014 (+) Length   506 a.a.
NCBI ID   WP_005989245.1    Uniprot ID   F0B9D0
Organism   Xanthomonas vesicatoria ATCC 35937 strain LMG911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2394494..2406014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD12_RS10495 (BJD12_10495) - 2395050..2395706 (+) 657 WP_005989238.1 RIO1 family regulatory kinase/ATPase -
  BJD12_RS10500 (BJD12_10500) - 2395930..2397900 (-) 1971 WP_042827682.1 beta-N-acetylglucosaminidase domain-containing protein -
  BJD12_RS10505 (BJD12_10505) - 2398667..2399041 (-) 375 WP_196769974.1 P-II family nitrogen regulator -
  BJD12_RS10510 (BJD12_10510) - 2399194..2399478 (+) 285 WP_005989244.1 accessory factor UbiK family protein -
  BJD12_RS10515 (BJD12_10515) comM 2399494..2401014 (+) 1521 WP_005989245.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BJD12_RS10520 (BJD12_10520) - 2401472..2401981 (+) 510 WP_039423865.1 lipocalin family protein -
  BJD12_RS10525 (BJD12_10525) - 2402572..2402748 (-) 177 WP_005989247.1 hypothetical protein -
  BJD12_RS10530 (BJD12_10530) - 2403128..2404708 (+) 1581 WP_005989248.1 EAL domain-containing protein -
  BJD12_RS10535 (BJD12_10535) - 2404891..2406012 (-) 1122 WP_005989249.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54043.90 Da        Isoelectric Point: 8.7148

>NTDB_id=209880 BJD12_RS10515 WP_005989245.1 2399494..2401014(+) (comM) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALAEYEFIGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQQAPAAELAVAAMGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPDASE
AEALETAAITSISGRRLDLARWRQRPYRAPHHTASAVALVGGGAHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRLRVVAARQRQLARGPLPNAQLDQPDTDRHCRLHNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDST
TIATRHLTEAIGYRKLDRALTAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=209880 BJD12_RS10515 WP_005989245.1 2399494..2401014(+) (comM) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTGTCCGG
CGGCCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCAGCGGTGCGCGAATCACGCGAACGCGTGCGTGCCGCCTTGC
TGTGCGCCCAGTTTGAATTCCCGGCCCGGCGGATCACCATCAATCTGGCGCCAGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTGGCTGCCAGCGGGCAAATCGACCGGCAGGCGCTGGCCGAGTATGAATTCAT
TGGCGAGCTTGCACTGACCGGCGAGCTGCGCGGCGTCGATGGCGTGCTGCCGGCCGCCCTGGCTGCCGCGCAGGCCGGGC
GGCGGCTGATCGTGCCGCTGGCCAACGGTGCCGAGGCCGCCATCGCCGGGCACGTCCAGGCCTTCACCGCTCGCACCCTG
CTGGAAGTCTGCGCGGCCCTCAACGGCACCCAGCAGGCGCCGGCTGCCGAACTGGCGGTTGCAGCCATGGGCGCACGCGC
CCTGCCCGACATGGCCGATGTGCGTGGCCAGCCGCACGCACGCCGCGCACTGGAGATCGCCGCAGCCGGTGGCCATCATC
TGCTACTGGTCGGCAGCCCCGGATGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTACCGGACGCCAGCGAA
GCCGAAGCACTGGAAACCGCCGCGATTACCTCCATCAGCGGCCGCAGGCTGGATCTTGCCCGCTGGCGGCAGCGCCCCTA
CCGTGCCCCGCACCACACCGCCAGCGCCGTCGCCCTGGTCGGCGGCGGCGCGCACCCGCGCCCCGGCGAGATCTCGCTGG
CCCATAACGGCGTGCTGTTTCTGGATGAACTGCCCGAGTGGCAACGCCAGACGCTGGAAGTACTGCGCGAGCCATTGGAA
TCGGGTCTGGTCACGATCTCGCGGGCAGCGCGCAGCGTGGATTTCCCGGCACGGTTTCAACTGGTTGCGGCGATGAACCC
GTGTCCGTGCGGGTGGGCCGGCGACGGCAGCGGGCGGTGTCGCTGCAGTAGTGACAGCATCCGCCGCTATCGCAGCCGCA
TTTCCGGGCCGTTGCTGGACCGCATCGACCTGCATGTGGAAGTCCCGCGTCTGCCGCCGCAAGCATTGCGTAGCGGCAAC
CTGGGCGAGGACAGCGCGAGCGTACGTTTGCGGGTGGTCGCCGCGCGGCAGCGCCAGCTCGCCCGCGGGCCCCTACCCAA
TGCGCAGCTCGACCAGCCCGACACCGATCGCCATTGCCGACTGCACAACGACGACCAACTGCTGCTGGAGCGTGCGATCG
AGCATCTGCAGCTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCGCGCACCATTGCCGATCTGGACGACAGCACC
ACGATTGCAACACGCCACCTGACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCGCTGACCGCCGCCAGCGCGGCATA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0B9D0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

54.599

100

0.551
  comM Glaesserella parasuis strain SC1401

54.348

100

0.543
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.495

99.012

0.52
  comM Legionella pneumophila strain ERS1305867

52.495

99.012

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.457

Multiple sequence alignment