Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CRM98_RS06090 Genome accession   NZ_CP023867
Coordinates   1148927..1149421 (-) Length   164 a.a.
NCBI ID   WP_002852694.1    Uniprot ID   -
Organism   Campylobacter jejuni strain FDAARGOS_422     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1143927..1154421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM98_RS06075 (CRM98_06075) metE 1144566..1146830 (-) 2265 WP_002852733.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  CRM98_RS06080 (CRM98_06080) - 1146842..1147612 (-) 771 WP_002852735.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CRM98_RS06085 (CRM98_06085) - 1147623..1148615 (-) 993 WP_002852878.1 isopenicillin N synthase family oxygenase -
  CRM98_RS06090 (CRM98_06090) luxS 1148927..1149421 (-) 495 WP_002852694.1 S-ribosylhomocysteine lyase Regulator
  CRM98_RS06095 (CRM98_06095) gatB 1149536..1150954 (+) 1419 WP_002852902.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CRM98_RS06100 (CRM98_06100) gpsA 1150951..1151847 (+) 897 WP_072233169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CRM98_RS06105 (CRM98_06105) - 1151857..1153035 (+) 1179 WP_002852672.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18194.21 Da        Isoelectric Point: 7.3250

>NTDB_id=209366 CRM98_RS06090 WP_002852694.1 1148927..1149421(-) (luxS) [Campylobacter jejuni strain FDAARGOS_422]
MPLLDSFKVDHTKMPAPAVRLAKVIKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=209366 CRM98_RS06090 WP_002852694.1 1148927..1149421(-) (luxS) [Campylobacter jejuni strain FDAARGOS_422]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATAAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGCATACCAAATAAAGACATTATGAGCGAAAAAGGTACTC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATTTAAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCTAAAGCTTGGAAAGCAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment