Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IMCC3135_RS30710 Genome accession   NZ_CP018632
Coordinates   7067437..7068972 (-) Length   511 a.a.
NCBI ID   WP_088921065.1    Uniprot ID   -
Organism   Granulosicoccus antarcticus IMCC3135     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7062437..7073972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC3135_RS30695 (IMCC3135_31065) - 7062765..7064030 (-) 1266 WP_088921062.1 aminotransferase class V-fold PLP-dependent enzyme -
  IMCC3135_RS30700 (IMCC3135_31070) - 7064119..7065972 (-) 1854 WP_088921063.1 O-antigen ligase family protein -
  IMCC3135_RS30705 (IMCC3135_31075) - 7066400..7067326 (+) 927 WP_088921064.1 YfaP family protein -
  IMCC3135_RS30710 (IMCC3135_31080) comM 7067437..7068972 (-) 1536 WP_088921065.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IMCC3135_RS30715 (IMCC3135_31085) - 7069101..7069463 (-) 363 WP_088921066.1 DUF805 domain-containing protein -
  IMCC3135_RS30720 (IMCC3135_31090) - 7069765..7070079 (+) 315 WP_088921067.1 BON domain-containing protein -
  IMCC3135_RS30725 (IMCC3135_31095) - 7070401..7071552 (-) 1152 WP_088921068.1 FlgD immunoglobulin-like domain containing protein -
  IMCC3135_RS30730 (IMCC3135_31100) - 7071549..7072451 (-) 903 WP_088921069.1 TolB family protein -
  IMCC3135_RS30735 (IMCC3135_31105) - 7072455..7073150 (-) 696 WP_157736404.1 hypothetical protein -
  IMCC3135_RS30740 (IMCC3135_31110) - 7073240..7073707 (-) 468 WP_088921071.1 hypothetical protein -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 55570.00 Da        Isoelectric Point: 8.5975

>NTDB_id=209193 IMCC3135_RS30710 WP_088921065.1 7067437..7068972(-) (comM) [Granulosicoccus antarcticus IMCC3135]
MSYATVHSCTLCGVQALPVIVEIHIGGGLPGMSIVGLPQSAVRESKDRVKAAIQHMGLTFPQVKIIVNLAPADLPKRGGR
FDLPIALGILQATGQLPEQALDGLMVLGELGLTGELRSVSGILPTSHAFAESRFSLFIPTANAAEAIRSRRTRVYAVDSL
QEAFRQLKHRHKEPLVLYGVSGENATMGLQGRPTVPDLSDVVGQHKARRALEIAAAGAHNLLMAGPPGTGKSMLASRLPG
IQPPMSEMEAMEAASVASISYTGFDAQHWGIRPFRAPHHTASGVALVGGGANPMPGEISLAHHGVLFLDELPEYSRSVLD
VLREPMETGRITVSRAARQAEFPSRFQLVAAMNPCPCGYYNDAVVRCNCTPDVIMRYQSRISGPFLDRIDLHVDMQRELH
LAVGAPVVGDNESSELIRQRVVQARDRQLDRQHMTNAMLAPRVLHEHAQLDKSASDLLRQATTRLNLTLRAQHRLLRVAR
TIADLEADAKVECRHLAESLSYRRAPLLNSF

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=209193 IMCC3135_RS30710 WP_088921065.1 7067437..7068972(-) (comM) [Granulosicoccus antarcticus IMCC3135]
ATGTCCTACGCCACGGTTCATTCGTGCACGCTATGCGGAGTTCAGGCTCTGCCCGTAATCGTTGAAATTCATATCGGTGG
CGGTCTGCCGGGTATGTCAATTGTCGGTCTGCCGCAGTCAGCGGTGCGTGAGAGCAAAGATCGGGTTAAAGCCGCTATAC
AGCACATGGGGTTGACCTTTCCGCAGGTGAAGATCATCGTCAATCTGGCGCCGGCGGATCTGCCCAAGCGCGGTGGCCGT
TTCGATCTTCCCATTGCACTGGGCATTCTGCAGGCGACAGGGCAGTTGCCCGAACAGGCGCTGGATGGGTTGATGGTGCT
GGGAGAGCTTGGCCTGACCGGAGAATTACGCTCGGTCAGTGGCATTCTGCCTACCTCGCATGCCTTCGCAGAATCGCGCT
TCAGTCTTTTCATTCCAACGGCTAATGCTGCCGAAGCCATTCGCAGTCGACGCACGCGAGTCTACGCGGTTGATAGTTTG
CAAGAGGCATTCCGGCAGCTCAAGCATCGTCACAAGGAGCCGTTGGTGCTGTATGGCGTTTCTGGTGAAAACGCTACGAT
GGGTCTGCAAGGTCGCCCGACAGTGCCCGATTTGTCGGATGTCGTAGGCCAGCATAAGGCCCGGCGAGCACTGGAAATAG
CGGCGGCAGGGGCACATAATTTACTAATGGCAGGTCCGCCCGGCACTGGTAAATCCATGCTGGCCAGTCGACTGCCGGGT
ATACAACCACCCATGAGCGAGATGGAGGCGATGGAGGCAGCATCGGTGGCCTCTATCAGCTACACCGGCTTTGATGCGCA
GCATTGGGGAATTCGTCCATTTCGTGCACCTCACCACACGGCATCTGGCGTGGCTTTGGTGGGAGGGGGCGCAAATCCCA
TGCCTGGAGAAATTTCACTGGCCCATCATGGCGTTTTATTCCTCGATGAATTGCCGGAGTACTCACGCTCCGTCCTCGAC
GTTTTACGCGAACCCATGGAAACGGGCCGAATAACGGTTTCCAGAGCCGCCAGGCAAGCAGAGTTTCCGTCGCGCTTCCA
GTTGGTAGCGGCGATGAACCCCTGTCCTTGTGGCTACTATAATGATGCCGTGGTGCGTTGTAACTGTACACCGGATGTGA
TCATGCGTTATCAGTCACGCATCTCAGGGCCATTTCTGGATCGCATAGACCTGCATGTGGATATGCAACGCGAGCTGCAT
CTGGCGGTGGGCGCGCCAGTGGTTGGCGACAATGAGAGCAGTGAGTTGATCCGGCAGCGGGTAGTGCAGGCACGCGATCG
CCAGCTTGATCGGCAACACATGACGAATGCCATGTTAGCGCCACGGGTTCTGCATGAGCATGCACAGCTCGACAAGTCTG
CCAGCGACTTGCTACGGCAGGCCACTACACGCCTGAACCTGACTTTGCGGGCTCAGCATCGTTTGTTACGAGTGGCTCGT
ACCATCGCTGATCTTGAGGCTGATGCTAAGGTCGAATGCCGCCACCTGGCTGAGAGCCTGTCGTACCGACGTGCACCGCT
TCTCAACAGTTTTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-397)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

48.911

98.826

0.483
  comM Vibrio cholerae strain A1552

48.141

100

0.481
  comM Haemophilus influenzae Rd KW20

46.85

99.413

0.466
  comM Glaesserella parasuis strain SC1401

46.429

98.63

0.458
  comM Legionella pneumophila str. Paris

45.419

100

0.456
  comM Legionella pneumophila strain ERS1305867

45.419

100

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.107

99.022

0.407

Multiple sequence alignment