Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | IMCC3135_RS10000 | Genome accession | NZ_CP018632 |
| Coordinates | 2298049..2298537 (+) | Length | 162 a.a. |
| NCBI ID | WP_088917472.1 | Uniprot ID | A0A2Z2NLT5 |
| Organism | Granulosicoccus antarcticus IMCC3135 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2257922..2297386 | 2298049..2298537 | flank | 663 |
Gene organization within MGE regions
Location: 2257922..2298537
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMCC3135_RS09825 (IMCC3135_10005) | - | 2257922..2259040 (-) | 1119 | WP_088917447.1 | SEC-C domain-containing protein | - |
| IMCC3135_RS09830 (IMCC3135_10010) | - | 2259287..2260090 (-) | 804 | WP_088917448.1 | hypothetical protein | - |
| IMCC3135_RS09835 | - | 2260271..2261517 (-) | 1247 | Protein_1951 | IS256 family transposase | - |
| IMCC3135_RS09840 | - | 2261871..2262077 (-) | 207 | Protein_1952 | transposase domain-containing protein | - |
| IMCC3135_RS35460 | - | 2262166..2262330 (+) | 165 | WP_157735889.1 | transposase domain-containing protein | - |
| IMCC3135_RS09850 (IMCC3135_10030) | - | 2262697..2265162 (+) | 2466 | WP_088917449.1 | SIR2 family protein | - |
| IMCC3135_RS09855 (IMCC3135_10035) | - | 2265739..2266623 (+) | 885 | WP_157735890.1 | hypothetical protein | - |
| IMCC3135_RS09860 (IMCC3135_10040) | tnpC | 2266824..2267956 (+) | 1133 | Protein_1956 | IS66 family transposase | - |
| IMCC3135_RS34005 | tnpA | 2267947..2268276 (-) | 330 | WP_157735891.1 | IS66 family insertion sequence element accessory protein TnpA | - |
| IMCC3135_RS09875 (IMCC3135_10050) | - | 2268850..2269311 (+) | 462 | WP_088917454.1 | hypothetical protein | - |
| IMCC3135_RS09880 (IMCC3135_10055) | - | 2269326..2270582 (+) | 1257 | WP_088917455.1 | hypothetical protein | - |
| IMCC3135_RS09885 (IMCC3135_10060) | - | 2270642..2274064 (+) | 3423 | WP_088917456.1 | hypothetical protein | - |
| IMCC3135_RS09890 (IMCC3135_10065) | - | 2274061..2274897 (+) | 837 | WP_088917457.1 | hypothetical protein | - |
| IMCC3135_RS09895 (IMCC3135_10070) | - | 2274910..2275329 (+) | 420 | WP_088917458.1 | hypothetical protein | - |
| IMCC3135_RS09900 (IMCC3135_10075) | - | 2275454..2276077 (+) | 624 | WP_088917459.1 | hypothetical protein | - |
| IMCC3135_RS35465 | - | 2276303..2276437 (-) | 135 | Protein_1964 | ISL3 family transposase | - |
| IMCC3135_RS09905 | - | 2276615..2276911 (-) | 297 | Protein_1965 | transposase | - |
| IMCC3135_RS09910 (IMCC3135_10080) | - | 2277010..2277897 (+) | 888 | WP_088917460.1 | hypothetical protein | - |
| IMCC3135_RS09915 (IMCC3135_10085) | - | 2278163..2278963 (-) | 801 | WP_157735892.1 | HNH endonuclease | - |
| IMCC3135_RS09920 (IMCC3135_10090) | - | 2279089..2279688 (-) | 600 | WP_088917462.1 | hypothetical protein | - |
| IMCC3135_RS09925 (IMCC3135_10095) | - | 2279858..2280454 (-) | 597 | WP_157735893.1 | hypothetical protein | - |
| IMCC3135_RS09930 (IMCC3135_10100) | tnpA | 2281007..2281330 (+) | 324 | WP_088917464.1 | IS66 family insertion sequence element accessory protein TnpA | - |
| IMCC3135_RS09935 (IMCC3135_10105) | tnpB | 2281327..2281695 (+) | 369 | WP_088917465.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| IMCC3135_RS09940 (IMCC3135_10110) | tnpC | 2281765..2283396 (+) | 1632 | WP_205737987.1 | IS66 family transposase | - |
| IMCC3135_RS09945 (IMCC3135_10115) | - | 2283890..2284399 (-) | 510 | WP_088917073.1 | hypothetical protein | - |
| IMCC3135_RS09950 (IMCC3135_10120) | istB | 2284396..2285187 (-) | 792 | WP_088917074.1 | IS21-like element helper ATPase IstB | - |
| IMCC3135_RS09955 (IMCC3135_10125) | istA | 2285168..2286709 (-) | 1542 | WP_088917075.1 | IS21 family transposase | - |
| IMCC3135_RS09960 | - | 2288161..2289344 (-) | 1184 | Protein_1976 | IS3 family transposase | - |
| IMCC3135_RS35470 | - | 2289689..2289943 (-) | 255 | WP_418251425.1 | helix-turn-helix domain-containing protein | - |
| IMCC3135_RS09970 (IMCC3135_10150) | - | 2289975..2290409 (+) | 435 | WP_157735894.1 | hypothetical protein | - |
| IMCC3135_RS09980 (IMCC3135_10155) | - | 2292548..2293756 (+) | 1209 | WP_157735895.1 | tyrosine-type recombinase/integrase | - |
| IMCC3135_RS09985 (IMCC3135_10160) | - | 2293749..2295548 (+) | 1800 | WP_157735896.1 | hypothetical protein | - |
| IMCC3135_RS09990 (IMCC3135_10165) | - | 2295536..2297386 (+) | 1851 | WP_157735897.1 | site-specific integrase | - |
| IMCC3135_RS09995 (IMCC3135_10170) | - | 2297370..2297981 (+) | 612 | WP_088917471.1 | hypothetical protein | - |
| IMCC3135_RS10000 (IMCC3135_10175) | ssb | 2298049..2298537 (+) | 489 | WP_088917472.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17573.23 Da Isoelectric Point: 4.9658
>NTDB_id=209182 IMCC3135_RS10000 WP_088917472.1 2298049..2298537(+) (ssb) [Granulosicoccus antarcticus IMCC3135]
MARGVNKVILVGNLGSDPEVRYMPNGGAVTNISIATSEQWTDKTSGQKQERTEWHRVTLFNRMGEIAGEYLKKGSQVYIE
GSIRTDKYQDKTTGEDRYSTQIIARDMQLLGGRTDGGGGGGDNYNQQSSSRAAPPTQSPNQPAANPSTAPAGNDEFDTEI
PF
MARGVNKVILVGNLGSDPEVRYMPNGGAVTNISIATSEQWTDKTSGQKQERTEWHRVTLFNRMGEIAGEYLKKGSQVYIE
GSIRTDKYQDKTTGEDRYSTQIIARDMQLLGGRTDGGGGGGDNYNQQSSSRAAPPTQSPNQPAANPSTAPAGNDEFDTEI
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=209182 IMCC3135_RS10000 WP_088917472.1 2298049..2298537(+) (ssb) [Granulosicoccus antarcticus IMCC3135]
ATGGCTCGCGGCGTGAATAAAGTCATTCTGGTCGGCAATCTCGGCTCAGATCCCGAGGTACGTTACATGCCCAATGGCGG
TGCTGTGACCAACATCAGTATTGCGACCTCAGAACAGTGGACTGACAAGACATCCGGACAAAAGCAGGAACGAACGGAGT
GGCATAGGGTCACATTGTTCAACCGTATGGGTGAAATCGCCGGTGAGTATCTGAAAAAAGGATCTCAGGTCTATATCGAA
GGTTCCATCCGTACTGATAAATATCAGGATAAAACAACCGGTGAAGATCGTTACTCCACTCAGATCATTGCAAGAGACAT
GCAGTTGCTGGGCGGAAGAACAGATGGCGGCGGTGGTGGTGGAGATAATTACAACCAGCAGTCGTCGTCTCGTGCAGCGC
CGCCAACTCAGTCTCCAAACCAGCCTGCCGCTAACCCTTCTACGGCTCCGGCTGGCAATGATGAATTTGACACCGAAATC
CCGTTCTGA
ATGGCTCGCGGCGTGAATAAAGTCATTCTGGTCGGCAATCTCGGCTCAGATCCCGAGGTACGTTACATGCCCAATGGCGG
TGCTGTGACCAACATCAGTATTGCGACCTCAGAACAGTGGACTGACAAGACATCCGGACAAAAGCAGGAACGAACGGAGT
GGCATAGGGTCACATTGTTCAACCGTATGGGTGAAATCGCCGGTGAGTATCTGAAAAAAGGATCTCAGGTCTATATCGAA
GGTTCCATCCGTACTGATAAATATCAGGATAAAACAACCGGTGAAGATCGTTACTCCACTCAGATCATTGCAAGAGACAT
GCAGTTGCTGGGCGGAAGAACAGATGGCGGCGGTGGTGGTGGAGATAATTACAACCAGCAGTCGTCGTCTCGTGCAGCGC
CGCCAACTCAGTCTCCAAACCAGCCTGCCGCTAACCCTTCTACGGCTCCGGCTGGCAATGATGAATTTGACACCGAAATC
CCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
52.841 |
100 |
0.574 |
| ssb | Glaesserella parasuis strain SC1401 |
46.369 |
100 |
0.512 |
| ssb | Neisseria gonorrhoeae MS11 |
47.126 |
100 |
0.506 |
| ssb | Neisseria meningitidis MC58 |
45.977 |
100 |
0.494 |