Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BI313_RS13560 Genome accession   NZ_CP018470
Coordinates   2793932..2795452 (+) Length   506 a.a.
NCBI ID   WP_039423854.1    Uniprot ID   A0AAJ0N475
Organism   Xanthomonas vesicatoria strain LM159     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2788932..2800452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI313_RS13535 (BI313_13455) - 2789491..2790147 (+) 657 WP_039427204.1 kinase -
  BI313_RS13540 (BI313_13460) - 2790367..2792337 (-) 1971 WP_039428262.1 beta-N-acetylglucosaminidase domain-containing protein -
  BI313_RS13545 (BI313_13465) - 2792601..2793062 (-) 462 WP_126936867.1 hypothetical protein -
  BI313_RS13550 (BI313_13470) - 2793105..2793479 (-) 375 WP_196769974.1 P-II family nitrogen regulator -
  BI313_RS13555 (BI313_13475) - 2793632..2793916 (+) 285 WP_005989244.1 accessory factor UbiK family protein -
  BI313_RS13560 (BI313_13480) comM 2793932..2795452 (+) 1521 WP_039423854.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BI313_RS13565 (BI313_13485) - 2795903..2796412 (+) 510 WP_039423865.1 lipocalin family protein -
  BI313_RS13570 (BI313_13490) - 2797003..2797179 (-) 177 WP_005989247.1 hypothetical protein -
  BI313_RS13575 (BI313_13495) - 2797559..2799139 (+) 1581 WP_005989248.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53910.74 Da        Isoelectric Point: 8.5261

>NTDB_id=208843 BI313_RS13560 WP_039423854.1 2793932..2795452(+) (comM) [Xanthomonas vesicatoria strain LM159]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALAEYEFIGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQQAPAAELAVAAVGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSGDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRLRVVAARQRQLARGPLPNAQLDQPDTDRHCRLHNDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSV
TIATRHLTEAIGYRKLDRALTAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=208843 BI313_RS13560 WP_039423854.1 2793932..2795452(+) (comM) [Xanthomonas vesicatoria strain LM159]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCTGAAGTTCGGGTGGAAGTGCATCTGTCCGG
CGGCCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCGGCGGTGCGCGAATCGCGCGAACGCGTGCGTGCCGCCTTGC
TGTGCGCGCAGTTTGAATTCCCGGCGCGGCGGATCACCATCAATCTGGCCCCAGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTGGCTGCCAGCGGTCAGATCGACCGGCAGGCGCTGGCCGAGTATGAATTCAT
TGGCGAGCTTGCACTGACCGGCGAGCTGCGCGGCGTCGATGGCGTGCTGCCGGCCGCCCTGGCTGCCGCGCAGGCCGGGC
GGCGGCTGATCGTGCCGCTGGCAAACGGTGCCGAGGCCGCCATCGCCGGGCACGTCCAGGCCTTCACCGCTCGCACCCTG
CTGGAAGTCTGCGCGGCCCTCAACGGCACCCAGCAGGCGCCGGCTGCCGAGTTGGCGGTTGCAGCCGTGGGCGCACGCGC
CCTGCCCGACATGGCCGATGTGCGTGGCCAGCCGCACGCACGCCGCGCACTGGAGATCGCCGCAGCCGGTGGCCATCATC
TGCTGCTGGTCGGCAGCCCCGGATGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGCTACCGGACGCCAGCGAA
GCCGAAGCACTGGAAACCGCCGCGATTACCTCCATCAGCGGCCGCGGACTGGATCTTGCCCGCTGGCGGCAGCGCCCCTA
CCGTGCCCCGCACCACACCGCCAGCGCCGTCGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGG
CCCATAACGGCGTGCTGTTTCTGGATGAACTGCCCGAGTGGCAACGCCAGACGCTGGAAGTACTGCGCGAGCCATTGGAA
TCGGGTCTGGTTACGATCTCGCGGGCAGCGCGCAGCGTGGATTTCCCGGCACGGTTTCAACTGGTGGCGGCGATGAACCC
GTGTCCGTGCGGGTGGGCCGGCGACGGCAGCGGGCGGTGTCGCTGCAGTGGTGACAGCATCCGCCGCTATCGCAGCCGCA
TTTCCGGGCCGTTACTGGACCGCATCGACCTGCATGTGGAAGTACCGCGTCTGCCGCCGCAAGCATTGCGTAGCGGCAAC
CTGGGCGAGGACAGCGCCAGCGTACGTTTGCGGGTGGTCGCCGCGCGTCAGCGCCAGCTCGCCCGCGGGCCCCTACCCAA
TGCGCAGCTCGACCAGCCCGACACCGATCGCCATTGCCGACTGCACAACGACGACCAACTGCTGCTGGAACGTGCGATCG
AGCATCTGCAGCTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCGCGCACCATTGCCGATCTGGACGACAGCGTC
ACGATTGCCACACGCCACCTGACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCGCTGACCGCCGCCAGCGCGGCATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

54.348

100

0.543
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.495

99.012

0.52
  comM Legionella pneumophila strain ERS1305867

52.495

99.012

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.401

100

0.458

Multiple sequence alignment