Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | PverR02_RS30560 | Genome accession | NZ_CP018420 |
| Coordinates | 6629682..6631199 (+) | Length | 505 a.a. |
| NCBI ID | WP_079444919.1 | Uniprot ID | - |
| Organism | Pseudomonas veronii strain R02 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 6607450..6665576 | 6629682..6631199 | within | 0 |
Gene organization within MGE regions
Location: 6607450..6665576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PverR02_RS30435 (PverR02_30315) | - | 6607819..6608340 (-) | 522 | WP_046381673.1 | disulfide bond formation protein B | - |
| PverR02_RS30440 (PverR02_30320) | - | 6608578..6609819 (-) | 1242 | WP_017845157.1 | heme biosynthesis protein HemY | - |
| PverR02_RS32835 | - | 6609825..6610940 (-) | 1116 | WP_227778751.1 | uroporphyrinogen-III C-methyltransferase | - |
| PverR02_RS32840 | - | 6610959..6611717 (-) | 759 | WP_046488891.1 | uroporphyrinogen-III synthase | - |
| PverR02_RS30450 (PverR02_30330) | hemC | 6611714..6612655 (-) | 942 | WP_017845160.1 | hydroxymethylbilane synthase | - |
| PverR02_RS30455 (PverR02_30335) | - | 6612794..6613540 (-) | 747 | WP_017845161.1 | LytTR family DNA-binding domain-containing protein | - |
| PverR02_RS30460 (PverR02_30340) | argH | 6614042..6615436 (+) | 1395 | WP_046381669.1 | argininosuccinate lyase | - |
| PverR02_RS30465 (PverR02_30345) | - | 6615477..6616136 (-) | 660 | WP_046381668.1 | glutathione S-transferase family protein | - |
| PverR02_RS30470 (PverR02_30350) | - | 6616262..6616546 (+) | 285 | WP_017845164.1 | hypothetical protein | - |
| PverR02_RS30475 (PverR02_30355) | - | 6616699..6616953 (+) | 255 | WP_017845165.1 | TIGR02647 family protein | - |
| PverR02_RS30480 (PverR02_30360) | - | 6617122..6619962 (+) | 2841 | WP_079445051.1 | class I adenylate cyclase | - |
| PverR02_RS30485 (PverR02_30365) | rnk | 6619959..6620369 (-) | 411 | WP_017845167.1 | nucleoside diphosphate kinase regulator | - |
| PverR02_RS30490 (PverR02_30370) | - | 6620501..6620719 (-) | 219 | WP_079444917.1 | DUF1289 domain-containing protein | - |
| PverR02_RS30495 (PverR02_30375) | cyaY | 6620722..6621069 (-) | 348 | WP_017845168.1 | iron donor protein CyaY | - |
| PverR02_RS30505 (PverR02_30385) | lptM | 6621308..6621475 (+) | 168 | WP_017845169.1 | LPS translocon maturation chaperone LptM | - |
| PverR02_RS30510 (PverR02_30390) | lysA | 6621485..6622732 (+) | 1248 | WP_017845170.1 | diaminopimelate decarboxylase | - |
| PverR02_RS30515 (PverR02_30395) | dapF | 6622736..6623566 (+) | 831 | WP_079444918.1 | diaminopimelate epimerase | - |
| PverR02_RS30520 (PverR02_30400) | - | 6623580..6624296 (+) | 717 | WP_017845172.1 | DUF484 family protein | - |
| PverR02_RS30525 (PverR02_30405) | xerC | 6624299..6625198 (+) | 900 | WP_046381665.1 | tyrosine recombinase XerC | - |
| PverR02_RS30530 (PverR02_30410) | - | 6625195..6625890 (+) | 696 | WP_017845174.1 | HAD family hydrolase | - |
| PverR02_RS30535 (PverR02_30415) | sutA | 6626005..6626331 (-) | 327 | WP_017845175.1 | transcriptional regulator SutA | - |
| PverR02_RS30540 (PverR02_30420) | - | 6626435..6626860 (-) | 426 | WP_017845176.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| PverR02_RS30545 (PverR02_30425) | - | 6627073..6628410 (-) | 1338 | WP_046381663.1 | ammonium transporter | - |
| PverR02_RS30550 (PverR02_30430) | glnK | 6628444..6628782 (-) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| PverR02_RS30555 (PverR02_30435) | - | 6629204..6629467 (+) | 264 | WP_017845178.1 | accessory factor UbiK family protein | - |
| PverR02_RS30560 (PverR02_30440) | comM | 6629682..6631199 (+) | 1518 | WP_079444919.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| PverR02_RS30565 (PverR02_30445) | glyA | 6631210..6632475 (-) | 1266 | WP_046381661.1 | serine hydroxymethyltransferase | - |
| PverR02_RS30570 (PverR02_30450) | - | 6632501..6633316 (-) | 816 | WP_017846024.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| PverR02_RS30575 (PverR02_30455) | - | 6633313..6634554 (-) | 1242 | WP_079444920.1 | benzoate/H(+) symporter BenE family transporter | - |
| PverR02_RS30580 (PverR02_30460) | - | 6634697..6636196 (+) | 1500 | WP_079444921.1 | PLP-dependent aminotransferase family protein | - |
| PverR02_RS30585 (PverR02_30465) | - | 6636214..6638190 (-) | 1977 | WP_046381657.1 | methyl-accepting chemotaxis protein | - |
| PverR02_RS30590 (PverR02_30470) | - | 6638368..6639288 (-) | 921 | WP_026139908.1 | LysR substrate-binding domain-containing protein | - |
| PverR02_RS30595 (PverR02_30475) | - | 6639441..6640844 (+) | 1404 | WP_079444922.1 | NorM family multidrug efflux MATE transporter | - |
| PverR02_RS30600 (PverR02_30480) | - | 6640895..6642559 (-) | 1665 | WP_017846030.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| PverR02_RS30605 (PverR02_30485) | rep | 6642815..6644824 (+) | 2010 | WP_046381655.1 | DNA helicase Rep | - |
| PverR02_RS30610 (PverR02_30490) | - | 6644883..6645455 (+) | 573 | WP_017846032.1 | xanthine phosphoribosyltransferase | - |
| PverR02_RS30615 (PverR02_30495) | - | 6645587..6647509 (-) | 1923 | WP_079444923.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| PverR02_RS30620 (PverR02_30500) | - | 6647646..6648059 (-) | 414 | WP_079444924.1 | cytochrome c5 family protein | - |
| PverR02_RS30625 (PverR02_30505) | - | 6648241..6648789 (-) | 549 | WP_046381653.1 | cupin domain-containing protein | - |
| PverR02_RS30630 (PverR02_30510) | alr | 6648906..6649979 (-) | 1074 | WP_079444925.1 | alanine racemase | - |
| PverR02_RS30635 (PverR02_30515) | - | 6650058..6650411 (-) | 354 | WP_017846037.1 | RidA family protein | - |
| PverR02_RS30640 (PverR02_30520) | dadA | 6650383..6651684 (-) | 1302 | WP_017846038.1 | D-amino acid dehydrogenase | - |
| PverR02_RS30645 (PverR02_30525) | - | 6651840..6652328 (+) | 489 | WP_017846039.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| PverR02_RS30650 (PverR02_30530) | - | 6652388..6652741 (-) | 354 | WP_017135860.1 | YkgJ family cysteine cluster protein | - |
| PverR02_RS30655 (PverR02_30535) | - | 6652856..6654148 (+) | 1293 | WP_079444926.1 | FAD-binding oxidoreductase | - |
| PverR02_RS30660 (PverR02_30540) | - | 6654150..6654374 (-) | 225 | WP_017846042.1 | DUF1127 domain-containing protein | - |
| PverR02_RS30665 (PverR02_30545) | - | 6654540..6655964 (+) | 1425 | WP_046385149.1 | PLP-dependent aminotransferase family protein | - |
| PverR02_RS30670 (PverR02_30550) | - | 6656027..6657595 (+) | 1569 | WP_079444927.1 | phospholipase D family protein | - |
| PverR02_RS30675 (PverR02_30555) | - | 6657681..6658823 (-) | 1143 | WP_046381650.1 | MFS transporter | - |
| PverR02_RS30680 (PverR02_30560) | - | 6658985..6660478 (-) | 1494 | WP_017846046.1 | aldehyde dehydrogenase | - |
| PverR02_RS30685 (PverR02_30565) | - | 6660709..6661071 (+) | 363 | WP_046381648.1 | cupin domain-containing protein | - |
| PverR02_RS30690 (PverR02_30570) | rpmG | 6661143..6661298 (-) | 156 | WP_003176906.1 | 50S ribosomal protein L33 | - |
| PverR02_RS30695 (PverR02_30575) | rpmB | 6661310..6661543 (-) | 234 | WP_003176907.1 | 50S ribosomal protein L28 | - |
| PverR02_RS30700 (PverR02_30580) | - | 6662002..6663594 (+) | 1593 | WP_079444928.1 | ABC transporter substrate-binding protein | - |
| PverR02_RS30705 (PverR02_30585) | radC | 6663654..6664328 (-) | 675 | WP_017846051.1 | DNA repair protein RadC | - |
Sequence
Protein
Download Length: 505 a.a. Molecular weight: 54060.18 Da Isoelectric Point: 8.1032
>NTDB_id=208597 PverR02_RS30560 WP_079444919.1 6629682..6631199(+) (comM) [Pseudomonas veronii strain R02]
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTQMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRSVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPFKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
HEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGDPSARCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREITALNPAPQP
GDNTSTASALVAQARDRQQQRQGCANAFLDLPGLRQHCALSRPDEAWLESACERLTLSLRAAHRLLKVARTLADLEHTDS
IRRSHIAEALQYRPSASSQVDSANV
MSLAIVHSRAQIGVEAPAVSVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTQMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRSVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPFKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
HEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGDPSARCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREITALNPAPQP
GDNTSTASALVAQARDRQQQRQGCANAFLDLPGLRQHCALSRPDEAWLESACERLTLSLRAAHRLLKVARTLADLEHTDS
IRRSHIAEALQYRPSASSQVDSANV
Nucleotide
Download Length: 1518 bp
>NTDB_id=208597 PverR02_RS30560 WP_079444919.1 6629682..6631199(+) (comM) [Pseudomonas veronii strain R02]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATCGGCGTCGAAGCCCCTGCCGTCAGCGTCGAAGTACACATGGCCAA
TGGTCTGCCATCGCTCACCCTGGTGGGTTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCC
TCAACTCCGCGCTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATAGCCCTCGGGATTCTCGCGGCGAGCGTGCAGGTGCCGACGCAGATGCTCGACGACGTGGAATGCCT
GGGGGAATTGGCGCTATCGGGCGAGGTACGCGCAGTGAAAGGTGTGTTGCCGGCAGCGCTCGCGGCGCGCAAGGCCGGGC
GCAGCGTGATCGTGCCCCGGGCGAATGCCGAAGAGGCCTGCCTGGCATCGGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTACAGGTGGTGGCGCACCTGAATGGGCATGTGCCGATCGAGCCCTTCAAGTCCGACGGTTTGCTGTACTTGAACAAACC
TTACCCGGACCTCAGCGAAGTCCAGGGCCAACTCGCCGCCAAACGCGCATTGCTGATCGCTGCGGCAGGCGCGCATAACC
TGTTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGTTTGCTGCCGCCGCTGAGTGAG
CACGAAGCGCTGGAAGTGGCAGCGATTCAATCAGTGGTCAGCCTGGCGCCCCTGAGTCATTGGCCCCATCGGCCGTTTCG
CCAGCCGCACCATTCGGCCTCCGGCCCGGCGCTGGTGGGTGGAGGGTCAAAGCCGCAACCGGGGGAAATCACCTTGGCCC
ACCATGGCGTGCTGTTCCTGGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTCGAGGTTTTGCGCGAGCCACTGGAGTCG
GGGCATATCGTGATCTCCCGCGCCCGCGACCGCGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCAATGAACCCCTG
CCCTTGCGGTTACATGGGCGACCCCAGCGCGCGCTGTCGCTGTACGCCGGAGCAGGTCCAGCGCTATCGCAACAAACTCT
CCGGGCCGTTGCTGGACCGGATCGACCTGCACCTGACCGTCGCTCGCGAAATCACCGCGCTGAACCCGGCCCCGCAGCCC
GGCGACAACACGTCCACCGCCTCGGCACTGGTAGCCCAGGCCCGGGACCGCCAGCAACAGCGCCAGGGCTGCGCCAATGC
GTTCCTCGACCTACCGGGGTTGCGCCAGCATTGCGCGCTGTCGAGGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCCTGACCCTGTCCCTTCGCGCAGCCCACCGCCTGCTCAAGGTCGCCCGCACGCTGGCGGATCTGGAACACACAGACAGC
ATCCGCCGCAGCCACATCGCCGAAGCCCTGCAATACCGCCCCTCAGCCTCCAGTCAGGTCGACAGCGCCAACGTTTAG
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATCGGCGTCGAAGCCCCTGCCGTCAGCGTCGAAGTACACATGGCCAA
TGGTCTGCCATCGCTCACCCTGGTGGGTTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGACCGCGTGCGCAGTGCCATCC
TCAACTCCGCGCTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATAGCCCTCGGGATTCTCGCGGCGAGCGTGCAGGTGCCGACGCAGATGCTCGACGACGTGGAATGCCT
GGGGGAATTGGCGCTATCGGGCGAGGTACGCGCAGTGAAAGGTGTGTTGCCGGCAGCGCTCGCGGCGCGCAAGGCCGGGC
GCAGCGTGATCGTGCCCCGGGCGAATGCCGAAGAGGCCTGCCTGGCATCGGGGTTGAAGGTGATTGCGGTGGACCACCTG
CTACAGGTGGTGGCGCACCTGAATGGGCATGTGCCGATCGAGCCCTTCAAGTCCGACGGTTTGCTGTACTTGAACAAACC
TTACCCGGACCTCAGCGAAGTCCAGGGCCAACTCGCCGCCAAACGCGCATTGCTGATCGCTGCGGCAGGCGCGCATAACC
TGTTGTTCAGCGGCCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGCCTGCCGGGTTTGCTGCCGCCGCTGAGTGAG
CACGAAGCGCTGGAAGTGGCAGCGATTCAATCAGTGGTCAGCCTGGCGCCCCTGAGTCATTGGCCCCATCGGCCGTTTCG
CCAGCCGCACCATTCGGCCTCCGGCCCGGCGCTGGTGGGTGGAGGGTCAAAGCCGCAACCGGGGGAAATCACCTTGGCCC
ACCATGGCGTGCTGTTCCTGGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTCGAGGTTTTGCGCGAGCCACTGGAGTCG
GGGCATATCGTGATCTCCCGCGCCCGCGACCGCGTGAGTTTCCCGGCGCGCTTTCAACTGGTCGCCGCAATGAACCCCTG
CCCTTGCGGTTACATGGGCGACCCCAGCGCGCGCTGTCGCTGTACGCCGGAGCAGGTCCAGCGCTATCGCAACAAACTCT
CCGGGCCGTTGCTGGACCGGATCGACCTGCACCTGACCGTCGCTCGCGAAATCACCGCGCTGAACCCGGCCCCGCAGCCC
GGCGACAACACGTCCACCGCCTCGGCACTGGTAGCCCAGGCCCGGGACCGCCAGCAACAGCGCCAGGGCTGCGCCAATGC
GTTCCTCGACCTACCGGGGTTGCGCCAGCATTGCGCGCTGTCGAGGCCGGATGAAGCCTGGCTGGAAAGCGCCTGCGAGC
GCCTGACCCTGTCCCTTCGCGCAGCCCACCGCCTGCTCAAGGTCGCCCGCACGCTGGCGGATCTGGAACACACAGACAGC
ATCCGCCGCAGCCACATCGCCGAAGCCCTGCAATACCGCCCCTCAGCCTCCAGTCAGGTCGACAGCGCCAACGTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
55.758 |
98.02 |
0.547 |
| comM | Glaesserella parasuis strain SC1401 |
55.09 |
99.208 |
0.547 |
| comM | Vibrio cholerae strain A1552 |
55.152 |
98.02 |
0.541 |
| comM | Haemophilus influenzae Rd KW20 |
53.4 |
99.01 |
0.529 |
| comM | Legionella pneumophila str. Paris |
50.605 |
98.218 |
0.497 |
| comM | Legionella pneumophila strain ERS1305867 |
50.605 |
98.218 |
0.497 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.23 |
99.802 |
0.461 |