Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BOC60_RS08135 Genome accession   NZ_CP018416
Coordinates   1512035..1513621 (-) Length   528 a.a.
NCBI ID   WP_085561453.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain 3000465972     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1507035..1518621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOC60_RS08100 (BOC60_06925) - 1507790..1508326 (-) 537 WP_004198028.1 peroxiredoxin family protein -
  BOC60_RS08105 (BOC60_06930) - 1508400..1509209 (+) 810 WP_004530963.1 hypothetical protein -
  BOC60_RS08115 (BOC60_06935) - 1509888..1510667 (-) 780 WP_004198026.1 thioesterase II family protein -
  BOC60_RS41375 (BOC60_06940) - 1510786..1510974 (-) 189 WP_017881354.1 hypothetical protein -
  BOC60_RS08125 (BOC60_06945) - 1511156..1511620 (+) 465 WP_004185200.1 GNAT family N-acetyltransferase -
  BOC60_RS08135 (BOC60_06950) comM 1512035..1513621 (-) 1587 WP_085561453.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BOC60_RS08140 (BOC60_06955) - 1513759..1514010 (-) 252 WP_004198021.1 accessory factor UbiK family protein -
  BOC60_RS08145 (BOC60_06960) - 1514379..1514717 (+) 339 WP_004198020.1 P-II family nitrogen regulator -
  BOC60_RS08150 (BOC60_06965) - 1514750..1516252 (+) 1503 WP_004526016.1 ammonium transporter -
  BOC60_RS08155 (BOC60_06970) gshA 1516611..1517900 (+) 1290 WP_004522914.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 55510.38 Da        Isoelectric Point: 7.1851

>NTDB_id=208549 BOC60_RS08135 WP_085561453.1 1512035..1513621(-) (comM) [Burkholderia pseudomallei strain 3000465972]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATAPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGDHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPAGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLAGDDAPSAAHIAEAIRYRRAFAPA

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=208549 BOC60_RS08135 WP_085561453.1 1512035..1513621(-) (comM) [Burkholderia pseudomallei strain 3000465972]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGTCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGGCGCCGAACGCCGCCGAGCTCTAC
CTGCCGCTGCCAAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCGA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGACCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCGCTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAGCTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCCGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGCCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGCTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCGCGGGCGAGACGCTGCTGCGCGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGCGGGCGA
CGACGCGCCGAGCGCCGCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGCGCCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.046

99.242

0.487
  comM Vibrio campbellii strain DS40M4

47.318

98.864

0.468
  comM Haemophilus influenzae Rd KW20

46.845

99.053

0.464
  comM Legionella pneumophila str. Paris

46.286

99.432

0.46
  comM Legionella pneumophila strain ERS1305867

46.286

99.432

0.46
  comM Glaesserella parasuis strain SC1401

46.463

99.053

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.775

98.295

0.42

Multiple sequence alignment