Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BOC54_RS15540 Genome accession   NZ_CP018406
Coordinates   3023485..3025071 (+) Length   528 a.a.
NCBI ID   WP_085507586.1    Uniprot ID   -
Organism   Burkholderia pseudomallei strain 2013833055     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3018485..3030071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOC54_RS15520 (BOC54_15295) gshA 3019206..3020495 (-) 1290 WP_004522914.1 glutamate--cysteine ligase -
  BOC54_RS15525 (BOC54_15300) - 3020854..3022356 (-) 1503 WP_004526016.1 ammonium transporter -
  BOC54_RS15530 (BOC54_15305) - 3022389..3022727 (-) 339 WP_004198020.1 P-II family nitrogen regulator -
  BOC54_RS15535 (BOC54_15310) - 3023096..3023347 (+) 252 WP_004198021.1 accessory factor UbiK family protein -
  BOC54_RS15540 (BOC54_15315) comM 3023485..3025071 (+) 1587 WP_085507586.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BOC54_RS15550 (BOC54_15325) - 3025523..3025987 (-) 465 WP_004185200.1 GNAT family N-acetyltransferase -
  BOC54_RS41660 (BOC54_15330) - 3026169..3026357 (+) 189 WP_017881354.1 hypothetical protein -
  BOC54_RS15560 (BOC54_15335) - 3026476..3027255 (+) 780 WP_004198026.1 thioesterase II family protein -
  BOC54_RS15570 (BOC54_15345) - 3027934..3028743 (-) 810 WP_004530963.1 hypothetical protein -
  BOC54_RS15575 (BOC54_15350) - 3028817..3029353 (+) 537 WP_004198028.1 peroxiredoxin family protein -

Sequence

Protein


Download         Length: 528 a.a.        Molecular weight: 55510.38 Da        Isoelectric Point: 7.1852

>NTDB_id=208499 BOC54_RS15540 WP_085507586.1 3023485..3025071(+) (comM) [Burkholderia pseudomallei strain 2013833055]
MSLAVVRSRAPAAGRAPEVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAASGQLPAGALDGREFAGELSLTGALRPMRGAFAMACGTARGQQADDDGSPAQAESPPARATAPNAAELY
LPLPSAAEAALVPGVTVYGAADLPALCAHLADTPDGRLAPVAAPRLDALPAAATADLADVIGQAGAKRALEVAAAGGHHM
LMIGPPGAGKSMLAARLPALLPPLTDDEALTSAAILSSSRAGFSPAQWRRRPFRAPHHSSSSAALVGGRNPPQPGEITLA
HLGVLFLDELPEFDRHVLETLREPLEAGRITISRAALQADFPAACQLIAAMNPCPCGWRGDPAGRCRCSPDIAARYLRKL
SGPLLDRIDIQIEIPALTPAELAERPAAAGESSETVAARVALARERQFARQRKTNHMLTGRETDTLCRPDSAGETLLRDA
GERFRWSARAYYRVLKVARTIADLEGDDAPSAAHIAEAIRYRRAFAPA

Nucleotide


Download         Length: 1587 bp        

>NTDB_id=208499 BOC54_RS15540 WP_085507586.1 3023485..3025071(+) (comM) [Burkholderia pseudomallei strain 2013833055]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCGCCCGCTGCCGGCCGTGCGCCGGAAGTCACCGTCGAAGTCCATCTCGCCAA
CGGTCTGCCGTCGTTCTCGATCGTCGGGCTGCCCGATCTCGAAGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGGTTCGAGTTTCCCGTGCGGCGCATCACCGTCAACCTCGCGCCGGCCGATTTGCCGAAGGAGTCCGGCCGC
TTCGATCTGCCGATCGCGCTCGGCATTCTCGCCGCGAGCGGCCAGCTTCCGGCCGGCGCGCTCGACGGCCGCGAGTTCGC
GGGCGAGCTGTCGCTCACGGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCGTGCGGCACGGCGCGCGGCCAGC
AGGCGGACGACGACGGCTCGCCCGCGCAAGCCGAATCGCCGCCCGCGCGGGCGACGGCGCCGAACGCCGCCGAGCTCTAC
CTGCCGCTGCCAAGCGCGGCCGAGGCGGCGCTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGATCTGCCCGCGCTGTG
CGCGCACCTCGCCGACACGCCGGACGGGCGGCTCGCCCCCGTCGCCGCGCCCCGGCTCGACGCGCTCCCCGCCGCAGCAA
CGGCCGATCTCGCCGATGTGATCGGCCAGGCGGGCGCGAAGCGCGCGCTCGAAGTCGCCGCCGCGGGCGGCCACCACATG
CTGATGATCGGGCCGCCGGGCGCGGGCAAATCGATGCTCGCCGCGCGCCTGCCCGCCCTCTTGCCGCCGCTCACCGATGA
CGAGGCGCTGACGTCGGCCGCGATCCTGTCGTCGAGCCGCGCGGGCTTCTCGCCCGCTCAATGGCGGCGGCGCCCGTTTC
GCGCGCCGCATCACTCGTCGAGCTCGGCCGCGCTCGTCGGCGGCCGCAATCCGCCGCAGCCGGGCGAGATCACGCTCGCA
CACCTGGGCGTGCTGTTCCTCGACGAACTGCCGGAATTCGACCGGCACGTGCTCGAGACGCTGCGCGAGCCGCTCGAGGC
CGGCCGCATCACGATCTCGCGCGCCGCGCTGCAGGCGGATTTTCCGGCCGCGTGCCAACTGATCGCCGCGATGAATCCGT
GCCCGTGCGGCTGGCGCGGCGACCCGGCCGGCCGCTGCCGCTGCTCGCCCGACATCGCCGCGCGCTATCTGCGCAAGCTG
TCCGGGCCGCTCCTCGACCGGATCGACATCCAGATCGAGATTCCCGCGCTCACGCCCGCCGAGCTGGCCGAGCGGCCGGC
GGCCGCCGGCGAATCGAGCGAAACCGTGGCCGCGCGCGTCGCGCTCGCGCGCGAGCGGCAATTCGCGAGGCAGCGCAAGA
CCAACCACATGCTGACGGGCCGCGAGACCGATACGCTCTGCCGCCCGGACAGCGCGGGCGAGACGCTGCTGCGCGACGCG
GGCGAGCGGTTCCGCTGGTCGGCGCGCGCGTACTACCGCGTGCTGAAGGTCGCGCGGACGATCGCGGACCTCGAGGGCGA
CGACGCGCCGAGCGCCGCGCATATCGCCGAGGCGATCCGGTATCGACGGGCGTTCGCGCCGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(216-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.046

99.242

0.487
  comM Vibrio campbellii strain DS40M4

47.51

98.864

0.47
  comM Haemophilus influenzae Rd KW20

46.845

99.053

0.464
  comM Legionella pneumophila str. Paris

46.476

99.432

0.462
  comM Legionella pneumophila strain ERS1305867

46.476

99.432

0.462
  comM Glaesserella parasuis strain SC1401

46.272

99.053

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.16

98.295

0.424

Multiple sequence alignment