Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BS103_RS00760 Genome accession   NZ_CP018332
Coordinates   154429..155559 (-) Length   376 a.a.
NCBI ID   WP_097355435.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain A1296     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 149429..160559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS103_RS00735 (BS103_00725) - 149604..150368 (-) 765 WP_000786954.1 AraC family transcriptional regulator -
  BS103_RS00740 (BS103_00730) - 150390..151604 (-) 1215 WP_000372838.1 MFS transporter -
  BS103_RS00745 (BS103_00735) - 151741..152391 (+) 651 WP_001984979.1 TetR/AcrR family transcriptional regulator -
  BS103_RS00750 (BS103_00740) - 152497..153417 (+) 921 WP_000084546.1 DMT family transporter -
  BS103_RS00755 (BS103_00745) - 153809..154378 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  BS103_RS00760 (BS103_00750) dprA 154429..155559 (-) 1131 WP_097355435.1 DNA-processing protein DprA Machinery gene
  BS103_RS00765 (BS103_00755) tsaP 155580..156734 (-) 1155 WP_032051422.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BS103_RS00770 (BS103_00760) def 156857..157387 (+) 531 WP_001196539.1 peptide deformylase -
  BS103_RS00775 (BS103_00765) - 157424..157852 (+) 429 WP_000231981.1 DUF2946 family protein -
  BS103_RS00780 (BS103_00770) - 157924..160038 (+) 2115 WP_001120664.1 TonB-dependent copper receptor -
  BS103_RS00785 (BS103_00775) - 160092..160298 (+) 207 WP_000182542.1 hypothetical protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 42008.56 Da        Isoelectric Point: 6.5805

>NTDB_id=208093 BS103_RS00760 WP_097355435.1 154429..155559(-) (dprA) [Acinetobacter baumannii strain A1296]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDCLAKWSSLGLHANHLKRVNEFQTPQGQAQFEQLVQQF
RQHTDFILTPDDSGYPTQLLPYTDHPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVVHHNIPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=208093 BS103_RS00760 WP_097355435.1 154429..155559(-) (dprA) [Acinetobacter baumannii strain A1296]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATTGTTTAGCAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGCCCCAAGGTCAAGCGCAGTTTGAACAACTTGTACAACAATTT
CGTCAGCATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATCACCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGCGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CGCCATTACAACAGCATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCAACA
TTAAAAAGTGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGCCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATCCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAGATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTGGGACAAAATATTGACCAGCTTGTAGTTCACCATAATATTCC
AGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

98.67

100

0.987

  dprA Acinetobacter baumannii D1279779

98.404

100

0.984

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383


Multiple sequence alignment