Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TE101_RS19620 Genome accession   NZ_CP018321
Coordinates   4541995..4543509 (+) Length   504 a.a.
NCBI ID   WP_101566438.1    Uniprot ID   -
Organism   Alteromonas macleodii strain Te101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4536995..4548509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TE101_RS19605 (TE101_19625) ilvA 4537328..4538875 (-) 1548 WP_101566435.1 threonine ammonia-lyase, biosynthetic -
  TE101_RS19610 (TE101_19630) ilvD 4538875..4540725 (-) 1851 WP_014977810.1 dihydroxy-acid dehydratase -
  TE101_RS19615 (TE101_19635) - 4541168..4541785 (+) 618 WP_014951393.1 trimeric intracellular cation channel family protein -
  TE101_RS19620 (TE101_19640) comM 4541995..4543509 (+) 1515 WP_101566438.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TE101_RS19625 (TE101_19645) ilvY 4543530..4544402 (-) 873 WP_014951395.1 HTH-type transcriptional activator IlvY -
  TE101_RS19630 (TE101_19650) ilvC 4544560..4546038 (+) 1479 WP_101566439.1 ketol-acid reductoisomerase -
  TE101_RS19635 (TE101_19655) - 4546172..4547419 (-) 1248 WP_061096227.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54059.68 Da        Isoelectric Point: 6.6927

>NTDB_id=208063 TE101_RS19620 WP_101566438.1 4541995..4543509(+) (comM) [Alteromonas macleodii strain Te101]
MGMAVVKTFAGQGVAAPEVSVEIHLANGLPAFRLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMAAAHEDIALVYPGDNDVEAALVSHATRYPAFDL
LSVYEHLTGNKKLAKGQPFTSHSSRSASTGWDDIIGQKQAKRALVIAASGAHNLLMVGPPGTGKSLLASRLLSLLPDMSE
EEALEVAAIHSVKGEKLHAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANRSD
DSIHATRERVIAARHKQGLRQGKPNGALHAGELADICLLDDADLQFLQAAAKQLNLSMRVFHRTLKVARTIADLEEQNAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=208063 TE101_RS19620 WP_101566438.1 4541995..4543509(+) (comM) [Alteromonas macleodii strain Te101]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGGCAGCGCCAGAAGTAAGTGTAGAGATTCACCTTGCTAA
TGGTTTACCTGCTTTTCGACTGGTCGGCATGGCAGAAACCAGCGTTAAAGAAGCGCGAGAAAGAGTACGCAGCGCCCTGA
TAAACAGTGGTTTTGAGTTTCCCGCAAAACGAATAACCGTCAATTTAGCGCCAGCAGATATTCCCAAGTTTGGCGGGCGG
TTCGACCTTCCCATTGCCGTAGGCATTTTAGCTGCGTCGGGCTACATCTCAGACATTAGCCTGCTCAACATTGCCTTCGT
GGGCGAGCTTGCATTAAACGGCGAAATAAAGCCGGTTAACGGGCTTATTCCTGTTGTCATGGCAGCCGCACACGAAGACA
TTGCGCTCGTATATCCGGGTGATAATGACGTAGAGGCTGCATTGGTTTCTCATGCAACACGCTATCCCGCTTTCGATTTA
CTGTCTGTTTATGAACACCTTACCGGCAACAAAAAACTCGCCAAAGGCCAGCCGTTTACTTCTCATTCATCACGCAGCGC
TTCAACTGGTTGGGACGATATTATCGGTCAAAAGCAAGCCAAACGAGCGCTTGTTATCGCAGCAAGTGGAGCACACAATT
TACTTATGGTAGGGCCTCCTGGCACAGGTAAAAGCCTGCTCGCCAGCCGATTGCTGTCGCTATTACCCGATATGAGCGAG
GAAGAAGCGTTGGAAGTGGCTGCCATTCACTCTGTGAAAGGCGAAAAACTGCATGCAGAGCGTTTTCTAACTCGCCACCT
CCGCTCGCCCCATCATACTAGCTCTGCGGTGGCGCTTACTGGCGGTGGCTCAAACCCTGTACCGGGTGAAATATCGCTGG
CTCATAATGGTATTTTGTTTCTAGACGAACTGCCTGAATTTGGGCGAAAGGCACTGGATGTATTGCGCGAGCCACTTGAA
ACCGGCGACGTGCATTTGTCTCGTGCTTCAGGAAGCGCAACGTACCCCGCCAACTTTCAACTAGTAGCGGCGATGAACCC
AAGTCCGACGGGTGATATTGATGATAACCGACTAACCCCGCAGCAACAGCTCAACTACTTGAACCGGTTATCGGGACCAC
TGCTTGATAGAATTGATATACAAGTCGAAGTGCCGCGGCTACCTGACTACGACCTGCCAGAGCGTGCCAATAGATCTGAC
GACTCGATACACGCAACGCGAGAGCGGGTCATTGCAGCGCGTCACAAACAAGGGCTACGGCAAGGTAAGCCAAATGGGGC
GCTGCACGCGGGTGAGCTTGCCGATATATGCTTACTTGATGACGCTGATTTGCAGTTTTTACAAGCCGCTGCTAAACAGC
TTAATTTGTCTATGCGGGTATTTCATCGCACGTTAAAAGTGGCAAGAACCATTGCTGACCTTGAAGAGCAGAACGCTGTA
TCGCGGGCGCACATTGCAGAAGCATTGGGCTATCGCGCCCTCGATAACCTTATTAAACAGTTGAGCGCTAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.455

100

0.546
  comM Vibrio campbellii strain DS40M4

53.465

100

0.536
  comM Haemophilus influenzae Rd KW20

51.575

100

0.52
  comM Glaesserella parasuis strain SC1401

51.383

100

0.516
  comM Legionella pneumophila str. Paris

45.766

98.413

0.45
  comM Legionella pneumophila strain ERS1305867

45.766

98.413

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.604

100

0.429

Multiple sequence alignment