Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PFAS1_RS12115 Genome accession   NZ_CP018319
Coordinates   2634162..2635655 (-) Length   497 a.a.
NCBI ID   WP_076029308.1    Uniprot ID   -
Organism   Pseudomonas frederiksbergensis strain AS1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2629162..2640655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFAS1_RS12095 (PFAS1_12080) - 2629772..2630320 (-) 549 WP_076029305.1 Hsp20/alpha crystallin family protein -
  PFAS1_RS12105 (PFAS1_12090) - 2630697..2632673 (+) 1977 WP_076029306.1 methyl-accepting chemotaxis protein -
  PFAS1_RS12110 (PFAS1_12095) - 2632941..2634155 (+) 1215 WP_076029307.1 aldose 1-epimerase family protein -
  PFAS1_RS12115 (PFAS1_12100) comM 2634162..2635655 (-) 1494 WP_076029308.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PFAS1_RS29485 - 2635940..2636101 (+) 162 WP_156886717.1 hypothetical protein -
  PFAS1_RS12120 (PFAS1_12105) - 2636105..2636689 (+) 585 WP_076029309.1 hypothetical protein -
  PFAS1_RS12125 (PFAS1_12110) - 2636712..2637170 (+) 459 WP_076029310.1 VOC family protein -
  PFAS1_RS12130 (PFAS1_12115) - 2637230..2637613 (+) 384 WP_232252231.1 DUF3291 domain-containing protein -
  PFAS1_RS12135 (PFAS1_12120) - 2637625..2638497 (+) 873 WP_076029312.1 iron-containing redox enzyme family protein -
  PFAS1_RS12140 (PFAS1_12125) - 2638497..2639732 (+) 1236 WP_076029313.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52946.11 Da        Isoelectric Point: 7.8712

>NTDB_id=208029 PFAS1_RS12115 WP_076029308.1 2634162..2635655(-) (comM) [Pseudomonas frederiksbergensis strain AS1]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIAPYASNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVADARERQQTRQGCANAFLDLPGLRRHCKLSTVDETWLETACERLTLSLRAAHRLLKVARTLADLEQVEG
ITREHLAEALQYRPTTL

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=208029 PFAS1_RS12115 WP_076029308.1 2634162..2635655(-) (comM) [Pseudomonas frederiksbergensis strain AS1]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGAAGCACCCGCCGTTACCGTAGAAGTGCACCTGGCCAA
CGGCTTGCCGTCGCTGACCATGGTCGGGCTGCCCGAGGCGGCGGTGAAGGAAAGCAAGGACCGGGTGCGTAGCGCGATCA
TCAATTCGGGCCTGCAATTTCCGGCACGGCGCATCACCTTGAATCTCGCCCCTGCCGATTTGCCAAAGGACGGCGGGAGG
TTCGATCTGGCGATTGCATTGGGGATTCTGTCGGCCAGTGTGCAGGTACCGACTTTGACGCTGGATGATGTGGAGTGTCT
TGGGGAGTTGGCGCTATCGGGTGCGGTGCGGGCGGTTCGCGGGGTGTTGCCGGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCACGCTGGTAGTGCCGCGGGCGAATGCCGAGGAGGCCTGCCTGGCTTCGGGGTTGAAGGTGATTGCGGTGGATCATTTG
CTGGAAGCGGTCGCGCATTTCAATGGCCACACGCCCATCGCCCCCTATGCGTCCAACGGTTTGCTCTACGCCAGCAAACC
CTATCCAGACTTGAACGAAGTGCAGGGGCAACTTGCGGCCAAGCGAGCCTTGCTGATTGCGGCGGCGGGTGCTCATAACT
TGCTGTTCAGCGGTCCACCGGGGACGGGGAAAACGTTGTTGGCGAGTCGTTTGCCAGGGCTGTTACCGCCATTGGCCGAG
AGCGAAGCACTGGAAGTCGCGGCAATTCAATCGGTCGCCAGTTGTGTGCCGTTGAGTCATTGGCCACAGCGTCCCTTCCG
ACAGCCGCACCACTCCGCTTCAGGCCCGGCACTGGTGGGCGGTGGCTCGAAACCACAACCCGGCGAAATCACCCTCGCCC
ATCATGGCGTGCTGTTCCTCGATGAGCTTCCGGAATTTGATCGCAAGGTATTGGAGGTATTGAGAGAGCCACTGGAATCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTACGCTTCCCGGCACGCTTTCAACTGGTCGCGGCGATGAATCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGTGGTAAATGCAGTTGTACGCCGGACATGGTCCAGCGTTACCGCAACAAGCTGT
CGGGGCCACTGCTGGACCGCATCGATCTGCACCTGACCGTCGCTCGCGAAGCCACGGCGTTGAATCCTGCGTTAAAACCC
GGTGACGACACTGCCACCGCCGCCGAGTTGGTGGCCGATGCACGAGAACGCCAACAAACGCGCCAGGGCTGCGCCAATGC
GTTCCTCGATTTGCCGGGCCTGCGCAGACACTGCAAGTTATCCACAGTCGACGAAACCTGGCTGGAAACAGCGTGTGAAC
GGCTGACCTTGTCCCTTCGAGCGGCCCATCGACTGCTCAAGGTGGCTCGCACCTTGGCGGACCTTGAGCAAGTCGAAGGC
ATTACCCGTGAACACTTGGCCGAAGCGCTGCAATATCGGCCGACAACACTCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.152

99.598

0.549
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

53.6

100

0.539
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Legionella pneumophila str. Paris

50.402

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.402

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.307

100

0.467

Multiple sequence alignment