Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSZ04_RS23770 Genome accession   NZ_CP018312
Coordinates   3140325..3141848 (+) Length   507 a.a.
NCBI ID   WP_071236256.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3135325..3146848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS23755 (BSZ04_23460) ilvE 3136969..3137907 (-) 939 WP_005429790.1 branched-chain-amino-acid transaminase -
  BSZ04_RS23760 (BSZ04_23465) ilvM 3137920..3138204 (-) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  BSZ04_RS23765 (BSZ04_23470) ilvG 3138216..3139862 (-) 1647 WP_088881519.1 acetolactate synthase 2 catalytic subunit -
  BSZ04_RS23770 (BSZ04_23475) comM 3140325..3141848 (+) 1524 WP_071236256.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSZ04_RS23775 (BSZ04_23480) - 3141898..3142848 (-) 951 WP_088881520.1 DUF2860 domain-containing protein -
  BSZ04_RS23780 (BSZ04_23485) - 3143013..3143891 (+) 879 WP_071236254.1 acyltransferase -
  BSZ04_RS23785 (BSZ04_23490) - 3143933..3144535 (-) 603 WP_071236253.1 thiol:disulfide interchange protein DsbA/DsbL -
  BSZ04_RS23790 (BSZ04_23495) - 3144573..3145556 (-) 984 WP_088881653.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54871.98 Da        Isoelectric Point: 9.0788

>NTDB_id=208015 BSZ04_RS23770 WP_071236256.1 3140325..3141848(+) (comM) [Vibrio rotiferianus strain B64D1]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRCLVVPHANGDQAALVGKELHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAVVKERVNQARNSMLTRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=208015 BSZ04_RS23770 WP_071236256.1 3140325..3141848(+) (comM) [Vibrio rotiferianus strain B64D1]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTACAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCCAACTTTCAGTTTCCGGCGAAACGAATCACGGTCAATTTGGCTCCTGCGGATTTGCCCAAAGAAGGCGGACGC
TTCGATTTGCCGATTGCATTAGGAATTTTGGCCGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCTCTTTCTGGTGGATTGAGAACAGTAAAAGGCGTGCTGCCAGCAGCGTTGGCCGCGAATAAAAAACAGC
GTTGTTTAGTGGTGCCTCATGCCAATGGTGATCAGGCCGCACTTGTCGGTAAAGAGTTGCATAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCAGAGCTTTGTGGTCAACATCAATTGAATTTGTACCAAACGCCCAAGAAGAAAGAACTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAACAGCAAGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGTACTGGCAAAACCATGTTGGCTTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAAGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACACAACTGGAAGACGCGGCCGTT
TCGCGCCCCGCATCATTCCAGCTCAATGGCGGCTTTAGTTGGTGGTGGGTCTGTGCCGAGACCGGGTGAAATCTCTCTAG
CGCACAACGGCTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTGCGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCTAGAACGAATCCGCAAGCCATCCTGCGTTACCTCGGCCGATTATCAG
GCCCACTTCTCGACCGCTTTGATATGTCATTAGAAATTCCCGCATTGCCGAAAGGAACCCTCTCTGAAGGCGGCGATAGA
GGAGAACCAACGGCTGTCGTCAAAGAGCGGGTGAATCAAGCGCGTAACAGTATGCTGACTCGCAGTGGTAAGGTGAATGC
GTTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGCTGCAAAAAAGCGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTATCGATTCGTGCTTATCACCGCATCATTAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCGCCGCAA
ATTGAGCGAACGCACCTAGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAGCAGTTAACTGCGCAAGCTGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.817

100

0.988
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.725

100

0.641
  comM Legionella pneumophila str. Paris

49.799

98.225

0.489
  comM Legionella pneumophila strain ERS1305867

49.799

98.225

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.504

100

0.436

Multiple sequence alignment