Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BSZ04_RS09955 | Genome accession | NZ_CP018312 |
| Coordinates | 202052..202588 (+) | Length | 178 a.a. |
| NCBI ID | WP_088880318.1 | Uniprot ID | - |
| Organism | Vibrio rotiferianus strain B64D1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 197052..207588
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSZ04_RS09940 (BSZ04_09835) | uvrA | 197190..200012 (-) | 2823 | WP_088880315.1 | excinuclease ABC subunit UvrA | - |
| BSZ04_RS09945 (BSZ04_09840) | galU | 200150..201022 (-) | 873 | WP_088880316.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| BSZ04_RS09950 (BSZ04_09845) | qstR | 201130..201774 (-) | 645 | WP_088880317.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BSZ04_RS09955 (BSZ04_09850) | ssb | 202052..202588 (+) | 537 | WP_088880318.1 | single-stranded DNA-binding protein | Machinery gene |
| BSZ04_RS09960 (BSZ04_09855) | csrD | 202805..204820 (+) | 2016 | WP_088880319.1 | RNase E specificity factor CsrD | - |
| BSZ04_RS09965 (BSZ04_09860) | - | 204823..206271 (+) | 1449 | WP_088880320.1 | PilN domain-containing protein | - |
| BSZ04_RS09970 (BSZ04_09865) | gspM | 206268..206918 (+) | 651 | WP_088880321.1 | type II secretion system protein GspM | - |
| BSZ04_RS09975 (BSZ04_09870) | - | 206935..207243 (+) | 309 | WP_409582229.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19760.81 Da Isoelectric Point: 4.9269
>NTDB_id=207982 BSZ04_RS09955 WP_088880318.1 202052..202588(+) (ssb) [Vibrio rotiferianus strain B64D1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQGGWGQPQQPAQQQYNAPQQQPQQQAPQQ
PQQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQGGWGQPQQPAQQQYNAPQQQPQQQAPQQ
PQQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=207982 BSZ04_RS09955 WP_088880318.1 202052..202588(+) (ssb) [Vibrio rotiferianus strain B64D1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTTGGTAACGACCCTGAAATTCGTTACATGCCTAACGG
TGGTGCGGTAGCAAACATCACGATTGCAACTTCAGAGTCATGGCGTGACAAAGCGACTGGTGAACAGCGTGAAAAAACAG
AGTGGCATCGTGTGGCTTTGTTTGGCAAATTGGCTGAAGTAGCAGGTGAGTACCTGCGCAAAGGCTCACAGGTTTACGTC
GAAGGCCAACTTCAAACGCGTAAATGGCAAGACCAAAGTGGTCAAGACCGCTACACGACAGAAGTCGTTGTTCAAGGATT
CAACGGCGTTATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGCGCACCGATGGGTGGTGGTCAGCAACAGCAACAAGGTG
GTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAGTACAATGCTCCGCAGCAGCAACCTCAACAACAGGCTCCGCAGCAA
CCACAGCAGCAATACAATGAGCCGCCTATGGATTTTGATGACGATATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTTGGTAACGACCCTGAAATTCGTTACATGCCTAACGG
TGGTGCGGTAGCAAACATCACGATTGCAACTTCAGAGTCATGGCGTGACAAAGCGACTGGTGAACAGCGTGAAAAAACAG
AGTGGCATCGTGTGGCTTTGTTTGGCAAATTGGCTGAAGTAGCAGGTGAGTACCTGCGCAAAGGCTCACAGGTTTACGTC
GAAGGCCAACTTCAAACGCGTAAATGGCAAGACCAAAGTGGTCAAGACCGCTACACGACAGAAGTCGTTGTTCAAGGATT
CAACGGCGTTATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGCGCACCGATGGGTGGTGGTCAGCAACAGCAACAAGGTG
GTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAGTACAATGCTCCGCAGCAGCAACCTCAACAACAGGCTCCGCAGCAA
CCACAGCAGCAATACAATGAGCCGCCTATGGATTTTGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
80.22 |
100 |
0.82 |
| ssb | Glaesserella parasuis strain SC1401 |
56.477 |
100 |
0.612 |
| ssb | Neisseria meningitidis MC58 |
46.629 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
46.629 |
100 |
0.466 |