Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   BSZ04_RS09950 Genome accession   NZ_CP018312
Coordinates   201130..201774 (-) Length   214 a.a.
NCBI ID   WP_088880317.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain B64D1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 196130..206774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ04_RS09940 (BSZ04_09835) uvrA 197190..200012 (-) 2823 WP_088880315.1 excinuclease ABC subunit UvrA -
  BSZ04_RS09945 (BSZ04_09840) galU 200150..201022 (-) 873 WP_088880316.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  BSZ04_RS09950 (BSZ04_09845) qstR 201130..201774 (-) 645 WP_088880317.1 LuxR C-terminal-related transcriptional regulator Regulator
  BSZ04_RS09955 (BSZ04_09850) ssb 202052..202588 (+) 537 WP_088880318.1 single-stranded DNA-binding protein Machinery gene
  BSZ04_RS09960 (BSZ04_09855) csrD 202805..204820 (+) 2016 WP_088880319.1 RNase E specificity factor CsrD -
  BSZ04_RS09965 (BSZ04_09860) - 204823..206271 (+) 1449 WP_088880320.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24742.63 Da        Isoelectric Point: 8.4568

>NTDB_id=207981 BSZ04_RS09950 WP_088880317.1 201130..201774(-) (qstR) [Vibrio rotiferianus strain B64D1]
MRKSAYARKLFLISLKHDESSQLTQMKKYADMDIPLIGTDDLMEANPKHRNKILLIDFEEHKDLILSIKNLPLVWKNFET
IIFNVPKRLTTDELLSFGQLKGLFYKEDSAENIAEGFKEIINGQNWLPRNVTSQLLHYYRNVVSSHTTPATVDLTIRELQ
VLRCLQAGASNCQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=207981 BSZ04_RS09950 WP_088880317.1 201130..201774(-) (qstR) [Vibrio rotiferianus strain B64D1]
ATGAGAAAATCTGCTTATGCGAGAAAACTCTTTCTTATCAGCTTAAAACACGATGAAAGCTCTCAGCTAACACAAATGAA
GAAATATGCTGATATGGATATTCCTCTCATTGGTACTGATGACCTTATGGAAGCCAACCCTAAGCACCGCAACAAGATCT
TACTCATTGATTTTGAAGAGCACAAAGACTTGATTCTTTCGATTAAGAATCTTCCATTAGTGTGGAAGAATTTTGAAACA
ATAATATTTAACGTTCCAAAACGCCTAACTACGGATGAGTTACTCTCGTTTGGCCAGCTGAAAGGATTGTTCTATAAAGA
AGATAGCGCTGAAAATATCGCAGAGGGATTCAAAGAAATTATAAACGGCCAAAATTGGTTACCTAGGAATGTTACGAGCC
AACTCTTGCACTACTACCGTAATGTCGTCAGCTCTCATACCACTCCAGCAACCGTTGACCTCACCATTCGCGAGTTACAA
GTACTACGCTGTTTACAAGCGGGAGCTTCTAACTGCCAAATGGCAGAAGAACTATTTGTTAGTGAGTTCACAATAAAATC
ACACCTATATCAAATCTTCAAAAAACTATCCGTCAAAAATCGAGTACAAGCGATAGCATGGGCAGATCAAAATCTTCTGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

82.243

100

0.822
  qstR Vibrio parahaemolyticus RIMD 2210633

81.308

100

0.813
  qstR Vibrio cholerae strain A1552

53.271

100

0.533

Multiple sequence alignment