Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSZ05_RS06200 Genome accession   NZ_CP018308
Coordinates   1338930..1340453 (-) Length   507 a.a.
NCBI ID   WP_088876459.1    Uniprot ID   A0AAN1FF32
Organism   Vibrio mediterranei strain QT6D1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1333930..1345453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSZ05_RS06175 (BSZ05_06150) - 1334065..1335048 (+) 984 WP_038224136.1 serine/threonine protein kinase -
  BSZ05_RS06180 (BSZ05_06155) - 1335100..1335699 (+) 600 WP_038224138.1 thiol:disulfide interchange protein DsbA/DsbL -
  BSZ05_RS06185 (BSZ05_06160) - 1335745..1336629 (-) 885 WP_088876456.1 acyltransferase -
  BSZ05_RS06190 (BSZ05_06165) - 1336829..1337815 (+) 987 WP_088876457.1 DUF2860 domain-containing protein -
  BSZ05_RS06195 (BSZ05_06170) - 1337959..1338933 (+) 975 WP_088876458.1 DUF2860 family protein -
  BSZ05_RS06200 (BSZ05_06175) comM 1338930..1340453 (-) 1524 WP_088876459.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSZ05_RS06205 (BSZ05_06180) ilvG 1340937..1342583 (+) 1647 WP_038224147.1 acetolactate synthase 2 catalytic subunit -
  BSZ05_RS06210 (BSZ05_06185) ilvM 1342583..1342864 (+) 282 WP_006073039.1 acetolactate synthase 2 small subunit -
  BSZ05_RS06215 (BSZ05_06190) - 1342879..1343832 (+) 954 WP_006073040.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55344.54 Da        Isoelectric Point: 8.4711

>NTDB_id=207949 BSZ05_RS06200 WP_088876459.1 1338930..1340453(-) (comM) [Vibrio mediterranei strain QT6D1]
MGLSIIYSRASVGVEAPLVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQLPHDKLLAHEFVGELALSGELRVVKGVLPAALAANKSRRCLVVPEGNGNQAALVGREHHKSASGL
LDVCAYLMGQQALSLYTDTKQIKMVPKTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSE
QEAMETASVASLTQQEINEDNWKTRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRTNPQLILRYLSRLSGPLLDRFDMSIEIPSLPKGTLSEGGER
GESTQVVRQRVHRARDVMLSRNGKVNALLHSGEIEDYCRLKKTDAEFLENALHRLGLSVRAYHRIIKVARTIADLGGEDD
IQRAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=207949 BSZ05_RS06200 WP_088876459.1 1338930..1340453(-) (comM) [Vibrio mediterranei strain QT6D1]
ATGGGATTATCGATTATTTATAGTCGAGCGAGCGTTGGTGTTGAAGCACCTTTGGTTACGGTTGAAGTCCACATCAGTAA
TGGTATGCCCGGTTTTACACTGGTAGGACTTCCAGAGACGACAGTCAAGGAATCTAAAGACCGAGTACGTAGTGCCATCA
TCAATTCACGATTTGAGTTTCCGGCGAAAAGAATCACGGTGAATCTTGCTCCTGCGGATCTGCCTAAAGAGGGAGGGCGA
TTTGATCTTCCTATTGCGTTAGGTATTTTGGCGGCGTCTGATCAGCTACCTCACGATAAGCTACTCGCACATGAGTTTGT
TGGTGAGCTAGCGCTTTCTGGAGAGCTCAGGGTCGTCAAGGGGGTTTTACCTGCTGCACTCGCCGCTAACAAAAGCCGTC
GATGTTTAGTAGTGCCAGAGGGCAATGGTAATCAGGCGGCGTTGGTTGGCCGAGAACACCATAAATCGGCATCAGGTTTA
CTCGATGTCTGTGCGTATTTAATGGGCCAACAAGCTTTATCCCTATATACCGACACTAAACAGATAAAGATGGTGCCTAA
AACACGCGATCTACAGGATATCATCGGACAACAACAGGGAAAGCGAGCTTTAGAGATTGCCGCAGCAGGAAATCATAACT
TACTCTTTCTCGGTCCTCCTGGAACCGGAAAAACCATGTTGGCTTCACGGCTTTGCGACTTATTACCTGAAATGAGCGAA
CAAGAAGCGATGGAAACGGCCTCGGTCGCGTCGTTGACGCAACAAGAAATCAATGAAGACAATTGGAAAACTCGGCCTTT
TCGTGCCCCTCATCATTCGAGTTCTATGGCGGCATTAGTTGGTGGAGGTTCGATACCAAGACCTGGAGAAATTTCTCTGG
CACATAATGGGTTACTATTCCTCGATGAAATGCCTGAATTTGAAAGAAAAGTCTTGGACTCACTTCGAGAGCCGCTTGAG
TCAGGCGAAATTATCATCTCCCGAGCCCAAGGGAAAACCCGTTTTCCAGCTCGATTCCAACTCGTCGGCGCCTTGAACCC
AAGTCCTACTGGGTACTATGAAGGCAATCAGTCACGTACCAATCCTCAGCTAATTCTACGCTACCTCAGTCGATTATCGG
GACCTTTGCTCGACCGATTTGATATGTCGATTGAAATACCTTCATTACCCAAAGGCACATTGTCTGAAGGGGGAGAGCGA
GGGGAGTCAACTCAAGTCGTGCGTCAGCGTGTTCATCGAGCGCGTGATGTGATGTTAAGTCGCAATGGTAAGGTGAATGC
ACTCCTTCACAGCGGTGAAATTGAGGACTATTGTCGCTTAAAGAAAACAGATGCAGAGTTTCTTGAGAATGCTCTACACC
GTCTAGGGCTCTCTGTTCGCGCCTATCATCGAATTATCAAAGTAGCACGTACTATTGCTGATCTTGGCGGTGAGGATGAT
ATTCAAAGAGCACATTTAGCTGAAGCGTTAGGATATCGCGCTATGGATAGGCTGCTAAAACAATTGACCGCGCAAGCGGT
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

84.221

100

0.842
  comM Vibrio campbellii strain DS40M4

84.024

100

0.84
  comM Haemophilus influenzae Rd KW20

67.061

100

0.671
  comM Glaesserella parasuis strain SC1401

64.902

100

0.653
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.158

99.606

0.44

Multiple sequence alignment