Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BST98_RS14555 Genome accession   NZ_CP018297
Coordinates   3149725..3151257 (-) Length   510 a.a.
NCBI ID   WP_109375372.1    Uniprot ID   -
Organism   Photobacterium damselae strain Phdp Wu-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3144725..3156257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BST98_RS14525 (BST98_14485) - 3144739..3145413 (-) 675 WP_005302170.1 FadR/GntR family transcriptional regulator -
  BST98_RS22320 - 3145794..3145967 (+) 174 WP_005302173.1 hypothetical protein -
  BST98_RS14535 (BST98_14495) - 3146143..3146409 (+) 267 WP_005302176.1 YihD family protein -
  BST98_RS14540 (BST98_14500) ccoG 3146599..3147936 (+) 1338 WP_109375371.1 cytochrome c oxidase accessory protein CcoG -
  BST98_RS14545 (BST98_14505) - 3147979..3148968 (+) 990 WP_068945793.1 serine/threonine protein kinase -
  BST98_RS14550 (BST98_14510) - 3149058..3149657 (+) 600 WP_370466075.1 thiol:disulfide interchange protein DsbA/DsbL -
  BST98_RS14555 (BST98_14515) comM 3149725..3151257 (-) 1533 WP_109375372.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BST98_RS14560 (BST98_14520) - 3151694..3152818 (+) 1125 WP_109375373.1 hypothetical protein -
  BST98_RS14565 (BST98_14525) - 3152838..3153590 (-) 753 WP_109375374.1 recombinase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55177.55 Da        Isoelectric Point: 8.5011

>NTDB_id=207876 BST98_RS14555 WP_109375372.1 3149725..3151257(-) (comM) [Photobacterium damselae strain Phdp Wu-1]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQKSLSLRFQTKPDDDLLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKTRVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=207876 BST98_RS14555 WP_109375372.1 3149725..3151257(-) (comM) [Photobacterium damselae strain Phdp Wu-1]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCCGCAGAATCACTGCATAAATACGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAGGCTAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGAAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTTGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCCGGTG
GCCATAACCTTCTGTTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGCTTATGTGATTTATTACCTCCT
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGCTCTATGGCTGCCTTAGTTGGAGGTGGTTCAATTCCAAGGCCGGGCGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCGGCAAATTTTCAATTGATTGGAGC
GCTAAACCCAAGTCCAACAGGGTTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AGCTCTCCGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCAGCTCTACCGAAAGGTACTTTAGCTCAAGGT
GGTGAGCGCGGTGAGAGTACTCCTGTGATTAAAACGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTTTCGACCCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCATCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCGATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.667

100

0.767
  comM Vibrio cholerae strain A1552

76.275

100

0.763
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.525

99.412

0.622
  comM Legionella pneumophila str. Paris

49.9

97.843

0.488
  comM Legionella pneumophila strain ERS1305867

49.9

97.843

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.941

100

0.429

Multiple sequence alignment