Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BSR55_RS01235 Genome accession   NZ_CP018259
Coordinates   275030..276517 (-) Length   495 a.a.
NCBI ID   WP_100884357.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 270030..281517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS01220 (BSR55_01215) - 270508..272094 (-) 1587 WP_005034453.1 acyl CoA:acetate/3-ketoacid CoA transferase -
  BSR55_RS01225 (BSR55_01220) - 272443..273495 (+) 1053 WP_004825556.1 LacI family DNA-binding transcriptional regulator -
  BSR55_RS01230 (BSR55_01225) - 273770..274951 (+) 1182 WP_100884356.1 maltoporin -
  BSR55_RS01235 (BSR55_01230) comM 275030..276517 (-) 1488 WP_100884357.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BSR55_RS01240 (BSR55_01235) - 276589..276816 (-) 228 WP_004825547.1 accessory factor UbiK family protein -
  BSR55_RS01245 (BSR55_01240) glnK 277108..277446 (+) 339 WP_004725283.1 P-II family nitrogen regulator -
  BSR55_RS01250 (BSR55_01245) amt 277514..278917 (+) 1404 WP_004825546.1 ammonium transporter -
  BSR55_RS01255 (BSR55_01250) nrdR 279078..279542 (+) 465 WP_004825545.1 transcriptional regulator NrdR -
  BSR55_RS01260 (BSR55_01255) ribD 279575..280687 (+) 1113 WP_100884358.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54435.54 Da        Isoelectric Point: 7.8314

>NTDB_id=207775 BSR55_RS01235 WP_100884357.1 275030..276517(-) (comM) [Acinetobacter bereziniae strain XH901]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPENVTDDFEFIGELALDGHLRPVTGTLTIAMACQLAKHQLMLPQENADEAAQLPEFKVFAAHHL
KQVCDHFLNTQKIEVTSAQKSTLDKQYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPALNP
QENLEVASIYSIANTQHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IIISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQSRISGPLLDRIDLHIDVPPLKAQELQDTTPVE
DSATVRERVLQAFHFQIQRQGGLNHALSPKQLEKYVVLDETSQKMIEMAQQRLNLSARAYHRILRVSRTIADLAQSEQIQ
STHLTEALSYRGTQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=207775 BSR55_RS01235 WP_100884357.1 275030..276517(-) (comM) [Acinetobacter bereziniae strain XH901]
ATGTCTTTAGCCAAAATTTATACACGAGGCTTACTTGGATTGCATGCACCTTTAATTGAAGTAGAGGTCCATGTTAGTGC
AGGACTACCTTCTTTAACGATAGTTGGTTTGGCAGAAGCAGCCGTTCGTGAAAGTAAGGATCGTGTCCGCTCTGCAATCA
TCAATAGTGGTTTTCAGTTTCCAACCAAACGCTTGACCATCAATCTGGCACCTGCAGACCTTCCTAAAGATGGCTCTCGC
TTAGATCTTCCGATTGCATTAGGAATTCTGATTGCGACAGGTCAACTCCCTGAGAATGTCACAGACGATTTCGAGTTTAT
TGGTGAGTTAGCACTGGATGGTCATTTAAGACCTGTTACAGGCACATTAACGATTGCAATGGCTTGTCAATTGGCAAAAC
ACCAATTGATGCTTCCTCAAGAAAATGCTGATGAAGCCGCACAATTACCCGAATTCAAGGTATTTGCTGCACATCATTTA
AAACAAGTCTGTGATCATTTTTTAAATACACAGAAAATTGAAGTAACGTCCGCACAAAAATCTACTTTGGACAAACAATA
TAAATTTGATTTGGCTGATGTAAAAGGTCAGTTACGCCCTCGAAGAGCTCTAGAAATTGCCGCTGCAGGTGGACACTCGC
TTTTATTTAAAGGACCACCAGGAACAGGTAAAACACTTTTAGCTTCACGTTTACCTAGTATTTTGCCTGCATTGAATCCA
CAAGAAAATCTCGAAGTCGCCAGTATTTATTCGATTGCCAACACTCAACATCACTTTGGGCAGCGACCTTTTCGAGCACC
TCATCATACTGCTTCTGCAATTGCCTTGGTGGGAGGTGGATCGAACCCGAAACCCGGAGAAATTACACTTGCGCATTTAG
GGGTACTTTTCTTGGATGAATTACCCGAGTTTGATAAGAAAGTCTTAGAAGTTTTAAGGCAACCCCTTGAGTCTAAAGAA
ATCATCATTTCAAGAGCATCAAGACAAATTACCTTTCCAGCAAACTTTCAACTCATCGCAGCAATGAATCCATGTCCTTG
TGGTTATGCTTTTAATCAAGATAGCCGTTGCCAGTGCTCAGCTGAATCAATCAAACGTTATCAAAGTCGAATCTCAGGTC
CTTTATTGGATCGTATTGATCTACATATCGATGTACCACCATTAAAAGCTCAAGAATTACAAGATACAACTCCTGTTGAA
GATTCAGCAACAGTGCGAGAACGCGTACTTCAAGCTTTTCATTTTCAAATTCAACGCCAAGGCGGATTAAATCACGCTTT
ATCGCCAAAACAGTTGGAAAAGTATGTAGTTTTGGATGAAACATCCCAAAAGATGATTGAGATGGCACAACAACGTTTAA
ATTTATCTGCGCGGGCATATCATCGAATTTTACGAGTTTCTAGAACCATTGCAGATTTAGCACAAAGTGAACAAATTCAA
AGTACGCATTTGACAGAAGCTTTGTCTTATCGGGGAACGCAGTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.2

100

0.517
  comM Glaesserella parasuis strain SC1401

50.701

100

0.511
  comM Vibrio cholerae strain A1552

50.505

100

0.505
  comM Vibrio campbellii strain DS40M4

50.303

100

0.503
  comM Legionella pneumophila str. Paris

49.597

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.469

Multiple sequence alignment