Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AYT26_RS20305 Genome accession   NC_002570
Coordinates   4186205..4186711 (-) Length   168 a.a.
NCBI ID   WP_010900173.1    Uniprot ID   Q9K5N9
Organism   Halalkalibacterium halodurans C-125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4181205..4191711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS20280 (BH4043) - 4181593..4182228 (-) 636 WP_010900167.1 FMN-dependent NADH-azoreductase -
  AYT26_RS20285 (BH4044) - 4182601..4183074 (+) 474 WP_010900168.1 MarR family winged helix-turn-helix transcriptional regulator -
  AYT26_RS20290 (BH4045) - 4183271..4184614 (-) 1344 WP_010900169.1 MATE family efflux transporter -
  AYT26_RS21675 - 4184695..4184988 (+) 294 WP_010900170.1 MerR family transcriptional regulator -
  AYT26_RS21680 - 4185003..4185512 (+) 510 WP_010900171.1 GyrI-like domain-containing protein -
  AYT26_RS20300 (BH4048) rpsR 4185890..4186123 (-) 234 WP_010900172.1 30S ribosomal protein S18 -
  AYT26_RS20305 (BH4049) ssbA 4186205..4186711 (-) 507 WP_010900173.1 single-stranded DNA-binding protein Machinery gene
  AYT26_RS20310 (BH4050) rpsF 4186737..4187024 (-) 288 WP_010900174.1 30S ribosomal protein S6 -
  AYT26_RS20315 (BH4051) ychF 4187296..4188396 (-) 1101 WP_010900175.1 redox-regulated ATPase YchF -
  AYT26_RS20320 (BH4052) - 4188604..4188801 (-) 198 WP_010900176.1 DUF951 domain-containing protein -
  AYT26_RS20325 (BH4053) - 4188897..4189922 (-) 1026 WP_010900177.1 membrane protein -
  AYT26_RS20330 (BH4054) yyaC 4190022..4190672 (+) 651 WP_010900178.1 spore protease YyaC -
  AYT26_RS20335 (BH4055) - 4190717..4191427 (-) 711 WP_010900179.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18219.95 Da        Isoelectric Point: 4.6324

>NTDB_id=20729 AYT26_RS20305 WP_010900173.1 4186205..4186711(-) (ssbA) [Halalkalibacterium halodurans C-125]
MLNRVVLVGRLTRDPELRYTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKQAENVANYLKKGSLAGVDGRIQTR
SYDNNEGRRVFVTEVMAESVQFLEPRGSQSQGGSNVDNFGGGSPNNPMGGNDFGQQSGGSGRQSGGFSEDPFANDGKPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=20729 AYT26_RS20305 WP_010900173.1 4186205..4186711(-) (ssbA) [Halalkalibacterium halodurans C-125]
ATGTTAAATCGTGTCGTCCTAGTCGGTCGGTTGACACGTGATCCAGAGTTGCGCTACACGCCAAACGGTGTTGCTGTAGC
AAACTTTACACTTGCTGTAAACCGCCCGTTCTCGAACCAACAAGGAGAGCGCGAAGCAGATTTCATTAACTGTGTCGTTT
GGCGGAAGCAAGCGGAGAACGTGGCGAACTATTTGAAAAAGGGAAGTCTAGCTGGTGTTGATGGTCGGATTCAAACGCGC
AGTTATGACAACAATGAAGGCCGCAGAGTCTTTGTGACAGAGGTCATGGCAGAAAGCGTTCAATTCCTTGAACCGCGCGG
CTCACAAAGCCAAGGGGGATCAAACGTTGACAACTTTGGTGGCGGCTCCCCTAACAACCCAATGGGCGGTAATGATTTCG
GGCAACAATCTGGTGGCTCCGGACGTCAATCCGGTGGTTTCTCAGAAGACCCGTTTGCAAATGATGGCAAGCCAATCGAT
ATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K5N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.75

100

0.72
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.56
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

63.095

0.405
  ssb Neisseria gonorrhoeae MS11

34.444

100

0.369

Multiple sequence alignment