Detailed information NTG0020708

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HI_0312
• Genome accession: L42023
• Coordinates: 344054..345061 (-)
• Length: 335 a.a.
• NCBI ID: AAC21975.1
• Uniprot ID: -
• Organism: Haemophilus influenzae Rd KW20
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 339054..350061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HI_0305	-	339194..339613 (+)	420	AAC21970.1	conserved hypothetical protein	-
HI_0306	-	339663..340571 (-)	909	AAC21971.1	conserved hypothetical protein	-
HI_0307	-	340637..341452 (+)	816	AAC21972.1	pyrroline-5-carboxylate reductase (proC)	-
HI_0308	-	341452..342618 (+)	1167	AAC21973.1	conserved hypothetical transmembrane protein	-
HI_0309	-	342649..343542 (+)	894	AAC21974.1	integrase/recombinase (xerD)	-
HI_0310	-	343715..344002 (+)	288	AAC21977.1	predicted coding region HI0310	-
HI_0312	ruvB	344054..345061 (-)	1008	AAC21975.1	Holliday junction DNA helicase (ruvB)	Machinery gene
HI_0313	ruvA	345069..345683 (-)	615	AAC21976.1	Holliday junction DNA helicase (ruvA)	Machinery gene
HI_0314	-	345746..346318 (-)	573	AAC21978.1	crossover junction endodeoxyribonuclease (ruvC)	-
HI_0315	-	346365..347105 (-)	741	AAC21979.1	conserved hypothetical protein	-
HI_0316	-	347265..347741 (-)	477	AAC21980.1	datP pyrophosphohydrolase (ntpA)	-
HI_0317	-	347763..349529 (-)	1767	AAC21981.1	aspartyl-tRNA synthetase (aspS)	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.38 Da
• Isoelectric Point: 4.8466

>NTDB_id=20708 HI_0312 AAC21975.1 344054..345061(-) (ruvB) [Haemophilus influenzae Rd KW20]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide

• Length: 1008 bp

>NTDB_id=20708 HI_0312 AAC21975.1 344054..345061(-) (ruvB) [Haemophilus influenzae Rd KW20]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTGCGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACATCAGGGCCTGTGTTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCGATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGGCTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCACGTGGCCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (23-181)

• RuvB C-terminal winged helix domain (WHD_RuvB) (259-328)

• RuvB AAA lid domain (AAA_lid_4) (184-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	62.08	97.612	0.606
ruvB	Streptococcus pneumoniae TIGR4	57.669	97.313	0.561
ruvB	Streptococcus pneumoniae R6	57.669	97.313	0.561
ruvB	Streptococcus pneumoniae D39	57.669	97.313	0.561
ruvB	Helicobacter pylori 26695	54.633	93.433	0.51
ruvB	Synechocystis sp. PCC 6803	55.34	92.239	0.51