Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AYT26_RS12045 Genome accession   NC_002570
Coordinates   2505977..2507239 (-) Length   420 a.a.
NCBI ID   WP_010898538.1    Uniprot ID   Q9KAA5
Organism   Halalkalibacterium halodurans C-125     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2500977..2512239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS12030 (BH2382) - 2502021..2503019 (-) 999 WP_010898535.1 metallophosphoesterase family protein -
  AYT26_RS12035 (BH2383) recA 2503142..2504191 (-) 1050 WP_010898536.1 recombinase RecA Machinery gene
  AYT26_RS12040 (BH2384) - 2504383..2506002 (-) 1620 WP_010898537.1 DEAD/DEAH box helicase -
  AYT26_RS12045 (BH2385) cinA 2505977..2507239 (-) 1263 WP_010898538.1 competence/damage-inducible protein A Machinery gene
  AYT26_RS12050 (BH2386) pgsA 2507258..2507836 (-) 579 WP_010898539.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AYT26_RS12055 (BH2387) - 2507873..2508367 (-) 495 WP_010898540.1 YajQ family cyclic di-GMP-binding protein -
  AYT26_RS12060 (BH2388) - 2508508..2509380 (-) 873 WP_041820638.1 helix-turn-helix domain-containing protein -
  AYT26_RS12065 (BH2389) - 2509397..2510170 (-) 774 WP_010898542.1 DUF3388 domain-containing protein -
  AYT26_RS12070 (BH2390) - 2510478..2510732 (-) 255 WP_010898543.1 DUF3243 domain-containing protein -
  AYT26_RS12075 (BH2391) ymfI 2510828..2511556 (-) 729 WP_010898544.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46093.71 Da        Isoelectric Point: 5.4688

>NTDB_id=20708 AYT26_RS12045 WP_010898538.1 2505977..2507239(-) (cinA) [Halalkalibacterium halodurans C-125]
MKAEVIAVGSELLLGQIANTNGQFLSQQLAKAGVDVFYHSVVGDNATRLQETLEIASERSELIILTGGLGPTKDDLTKEV
VASFLHKELVIDEVALEQIVSFFEKRNLPMTENNRKQALVLKEATIFQNHYGMAPGMATIHQGVTYVLLPGPPREMRPMV
TEQVIPFLSSHVGDLQIISRVLRFFGIGESKLETELEDLIDGQSNPTIAPLASEGEVTLRLTVKHHDETQAALLLDETER
KIRERVGHYFYGYDETSLMEKLVSCLTKTGLSLASAESLTGGLFGARITNIPGASACFLAAITTYTNDMKQSWLNVPPHV
LEQHGAVSPECAIAMAQGVKKLTKADVTISFTGVAGPSPSEGKEPGTVFIGLCFRDDEPEAITLQLSGSREQIRERTLKH
GCQQILNRIKRWNERSNDKV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=20708 AYT26_RS12045 WP_010898538.1 2505977..2507239(-) (cinA) [Halalkalibacterium halodurans C-125]
ATGAAAGCAGAAGTAATTGCTGTCGGTTCAGAACTGCTTTTAGGACAAATTGCGAATACAAATGGCCAATTCCTCTCGCA
GCAGCTAGCAAAAGCAGGGGTTGACGTTTTTTATCACTCTGTCGTTGGTGACAACGCGACAAGACTTCAGGAAACGCTTG
AAATCGCAAGTGAACGTTCCGAGTTGATCATCCTCACTGGGGGACTGGGGCCAACGAAGGATGATTTGACTAAAGAGGTT
GTGGCATCGTTTCTTCACAAAGAGCTTGTGATCGATGAAGTAGCCCTTGAGCAAATTGTTTCCTTTTTTGAGAAACGAAA
CTTGCCAATGACGGAAAACAATCGCAAACAAGCACTCGTCCTGAAAGAGGCTACTATTTTTCAAAATCATTATGGCATGG
CACCAGGTATGGCGACGATCCATCAAGGGGTCACCTATGTTCTTTTACCAGGTCCGCCACGGGAAATGAGACCGATGGTG
ACAGAGCAAGTCATTCCATTCTTAAGCAGCCATGTTGGCGATTTGCAAATTATTTCCCGCGTACTGCGCTTTTTTGGCAT
CGGAGAATCGAAGCTTGAGACCGAGCTAGAAGATCTCATAGATGGTCAATCGAACCCAACGATTGCTCCCCTTGCCAGCG
AAGGAGAAGTCACGTTAAGGTTAACAGTAAAGCATCATGATGAAACACAGGCAGCGCTGCTGTTAGATGAAACAGAGAGG
AAGATACGTGAGCGGGTCGGTCACTATTTTTATGGATATGACGAAACTTCTTTAATGGAAAAGCTCGTTTCGTGTTTAAC
GAAAACGGGGCTTTCGCTTGCTAGTGCAGAAAGCCTGACAGGAGGATTATTCGGCGCCAGAATAACAAATATTCCTGGGG
CATCTGCCTGTTTTCTTGCCGCGATAACCACATATACTAATGACATGAAGCAAAGTTGGCTAAACGTCCCTCCACACGTG
TTAGAACAGCACGGGGCAGTCAGCCCAGAATGTGCTATAGCGATGGCACAAGGAGTGAAAAAGCTAACAAAGGCCGATGT
GACGATCAGTTTTACAGGTGTAGCTGGACCGTCACCATCCGAAGGAAAAGAACCAGGTACGGTATTTATCGGTTTGTGCT
TCCGAGATGACGAGCCGGAAGCGATCACCCTTCAACTTTCTGGCAGCCGTGAACAGATTCGTGAGCGCACATTAAAGCAC
GGATGTCAGCAGATCTTGAACAGAATAAAAAGGTGGAATGAACGAAGCAATGATAAAGTTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(256-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KAA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.501

97.857

0.533
  cinA Streptococcus mitis NCTC 12261

47.805

97.619

0.467
  cinA Streptococcus pneumoniae TIGR4

47.805

97.619

0.467
  cinA Streptococcus mitis SK321

47.561

97.619

0.464
  cinA Streptococcus pneumoniae Rx1

47.561

97.619

0.464
  cinA Streptococcus pneumoniae R6

47.561

97.619

0.464
  cinA Streptococcus pneumoniae D39

47.317

97.619

0.462
  cinA Streptococcus mutans UA159

47.291

96.667

0.457

Multiple sequence alignment