Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HI_0313 Genome accession   L42023
Coordinates   345069..345683 (-) Length   204 a.a.
NCBI ID   AAC21976.1    Uniprot ID   -
Organism   Haemophilus influenzae Rd KW20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 340069..350683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HI_0307 - 340637..341452 (+) 816 AAC21972.1 pyrroline-5-carboxylate reductase (proC) -
  HI_0308 - 341452..342618 (+) 1167 AAC21973.1 conserved hypothetical transmembrane protein -
  HI_0309 - 342649..343542 (+) 894 AAC21974.1 integrase/recombinase (xerD) -
  HI_0310 - 343715..344002 (+) 288 AAC21977.1 predicted coding region HI0310 -
  HI_0312 ruvB 344054..345061 (-) 1008 AAC21975.1 Holliday junction DNA helicase (ruvB) Machinery gene
  HI_0313 ruvA 345069..345683 (-) 615 AAC21976.1 Holliday junction DNA helicase (ruvA) Machinery gene
  HI_0314 - 345746..346318 (-) 573 AAC21978.1 crossover junction endodeoxyribonuclease (ruvC) -
  HI_0315 - 346365..347105 (-) 741 AAC21979.1 conserved hypothetical protein -
  HI_0316 - 347265..347741 (-) 477 AAC21980.1 datP pyrophosphohydrolase (ntpA) -
  HI_0317 - 347763..349529 (-) 1767 AAC21981.1 aspartyl-tRNA synthetase (aspS) -
  HI_0318 - 349748..350266 (+) 519 AAC21982.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22603.38 Da        Isoelectric Point: 6.5030

>NTDB_id=20709 HI_0313 AAC21976.1 345069..345683(-) (ruvA) [Haemophilus influenzae Rd KW20]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKVAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=20709 HI_0313 AAC21976.1 345069..345683(-) (ruvA) [Haemophilus influenzae Rd KW20]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCGATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTTACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAGCTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGTCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-201)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.408

100

0.368

Multiple sequence alignment