Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SMA_2120 Genome accession   HE613569
Coordinates   2058873..2059466 (-) Length   197 a.a.
NCBI ID   CCF03411.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2053873..2064466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_2113 cinA 2054650..2055909 (-) 1260 CCF03404.1 Competence/damage-inducible protein CinA Machinery gene
  SMA_2114 - 2056067..2056504 (-) 438 CCF03405.1 Facilitator superfamily protein -
  SMA_2115 - 2056443..2056673 (-) 231 CCF03406.1 Facilitator superfamily protein -
  SMA_2116 - 2056631..2057005 (-) 375 CCF03407.1 Facilitator superfamily protein -
  SMA_2117 - 2057387..2057689 (-) 303 CCF03408.1 Hypothetical protein -
  SMA_2118 - 2057708..2057851 (-) 144 CCF03409.1 Hypothetical protein -
  SMA_2119 - 2058112..2058768 (+) 657 CCF03410.1 Hypothetical protein -
  SMA_2120 ruvA 2058873..2059466 (-) 594 CCF03411.1 Holliday junction DNA helicase RuvA Machinery gene
  SMA_2121 hexB 2059468..2061411 (-) 1944 CCF03412.1 DNA mismatch repair protein MutL Machinery gene
  SMA_2122 hexA 2061528..2064098 (-) 2571 CCF03413.1 DNA mismatch repair protein MutS Machinery gene
  SMA_2123 - 2064085..2064441 (-) 357 CCF03414.1 Hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21820.29 Da        Isoelectric Point: 5.3568

>NTDB_id=20698 SMA_2120 CCF03411.1 2058873..2059466(-) (ruvA) [Streptococcus macedonicus ACA-DC 198]
MYDYIKGKLTKITAKYIVVEAGGLGYIVNVANPYSFSDLVNQEVQIYLHQVIREDVQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSDIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENSKASQTKTVTNEQLEEAMEALL
ALGYKAAELKKIRKLFEGTNETAEQYIKSSLKMLMKA

Nucleotide


Download         Length: 594 bp        

>NTDB_id=20698 SMA_2120 CCF03411.1 2058873..2059466(-) (ruvA) [Streptococcus macedonicus ACA-DC 198]
ATGTATGATTATATCAAAGGAAAATTAACTAAAATTACCGCCAAATACATTGTTGTCGAGGCTGGAGGGCTGGGCTATAT
CGTCAACGTTGCTAACCCATACAGTTTTTCAGACCTTGTCAACCAAGAGGTTCAGATTTATTTACACCAAGTCATTCGTG
AAGATGTGCAATTGTTATTTGGTTTTCACACAGAAGATGAAAAAGCTGTTTTTCTTAACTTGATTTCAGTTTCTGGGATT
GGTCCGACAACTGCGCTAGCGATTATTGCGGTTGATGATAATGAAGGGCTTGTCAATGCGATTGACACTAGTGATATCAA
GTATTTGATGAAATTTCCAAAAATTGGAAAAAAGACAGCTCAACAAATGGTCTTGGATTTAGCAGGAAAATTTGTCGATG
TTTCGGTGGAAAATAGTAAAGCTTCTCAGACAAAAACAGTTACAAACGAGCAGCTTGAGGAAGCTATGGAAGCTCTTTTG
GCCCTTGGCTATAAAGCTGCAGAGCTCAAGAAAATTCGTAAGTTATTTGAAGGAACAAATGAAACAGCAGAACAATACAT
CAAATCAAGCCTTAAAATGTTGATGAAAGCTTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.677

100

0.68
  ruvA Streptococcus pneumoniae D39

67.677

100

0.68
  ruvA Streptococcus pneumoniae TIGR4

67.513

100

0.675
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.887

100

0.421