Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AYT26_RS06480 Genome accession   NC_002570
Coordinates   1331355..1333709 (+) Length   784 a.a.
NCBI ID   WP_010897408.1    Uniprot ID   Q9KDH3
Organism   Halalkalibacterium halodurans C-125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1326355..1338709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS06455 (BH1234) - 1326539..1327024 (+) 486 WP_138090354.1 COG2426 family protein -
  AYT26_RS06460 (BH1235) - 1327057..1327332 (+) 276 WP_010897403.1 post-transcriptional regulator -
  AYT26_RS20540 secD 1327505..1328818 (+) 1314 WP_010897404.1 protein translocase subunit SecD -
  AYT26_RS20545 secF 1328808..1329743 (+) 936 WP_010897405.1 protein translocase subunit SecF -
  AYT26_RS06470 (BH1238) - 1330064..1330966 (+) 903 WP_010897406.1 cation diffusion facilitator family transporter -
  AYT26_RS06475 (BH1239) - 1330976..1331293 (+) 318 WP_010897407.1 LapA family protein -
  AYT26_RS06480 (BH1240) recJ 1331355..1333709 (+) 2355 WP_010897408.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AYT26_RS06485 (BH1241) - 1333709..1334224 (+) 516 WP_010897409.1 adenine phosphoribosyltransferase -
  AYT26_RS06490 (BH1242) - 1334544..1336730 (+) 2187 WP_010897410.1 RelA/SpoT family protein -
  AYT26_RS06495 (BH1243) dtd 1336759..1337199 (+) 441 WP_010897411.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 87947.37 Da        Isoelectric Point: 5.0207

>NTDB_id=20700 AYT26_RS06480 WP_010897408.1 1331355..1333709(+) (recJ) [Halalkalibacterium halodurans C-125]
MLESKARWNVAEQLDERIRPLLEHLHIEPIVAKLLVIRGIDTVEEAKTFLQVDESLLHDPYELDGMEQVVARVRQAIKAE
EKILIYGDYDADGVSSTSVMVYTLRELGAQFDYYIPNRFTEGYGPNENALRWAKEEGYQLVITVDTGIAAVHEAEVAKEI
GLDFIVTDHHEPPPVLPDAVAIINPKKPGCSYPCKHLAGVGVAFKLAHALLERVPYDLLDLVAIGTIADLVPLTDENRWL
AKEGLKAIETTTKPGIQALKKVCGFHEDNVQAEHVGFGIGPRINAAGRLDSAKPAVELLITDQVETGQQLAEQIDLLNKE
RQAIVSEIAAEAINLVKELYPPEDNHVLVVGGHGWNPGVIGIVASRLVETFYRPTIVLSYDEEKGIAKGSARSIEGFDMF
HELSKNRELLPHFGGHPMAAGLTMSLQDVDELRKRMNAQAREALRPEDFIPITRIDVQASVDEISVSTIEKMNALAPYGV
GNPEPKVMLTDVKIEGMRKIGAASNHLKVTFQQNGTTLDGVGFHLGHLSDEISPTARVSAVGVLSINEWNGHVKPQLMIE
DLAVNEWQLFDWRSARVDILSERIIGLPEEKRLLIAFREQTVQALGLASFNVFDGNDLANIPSMENRYVVLLDPPVESNQ
LSALFVEGGCPSRIYSIFYQEEDSYFSTNPTREHFRWFYGFLMKQKQFNLHTHGKRLAHTRGWTEETISFMAKVFFELGF
VTIKDGVITLVEAPEKKGLDQSRTFRMKQEQATIEQQFVYSSYEELKQWFTRAIQERKIKETIQ

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=20700 AYT26_RS06480 WP_010897408.1 1331355..1333709(+) (recJ) [Halalkalibacterium halodurans C-125]
ATGCTAGAATCGAAAGCAAGATGGAACGTAGCAGAGCAGCTGGACGAACGAATCCGTCCGCTGCTTGAACATTTACATAT
AGAACCGATCGTTGCCAAACTTTTAGTGATTCGCGGGATCGACACGGTAGAAGAAGCGAAGACTTTTTTACAAGTGGACG
AGTCCCTCCTTCATGATCCGTATGAGCTTGATGGAATGGAACAAGTGGTTGCTCGGGTCAGGCAAGCGATCAAGGCCGAG
GAAAAGATTTTGATTTACGGTGATTATGATGCGGATGGCGTTAGCTCCACGTCCGTGATGGTCTATACATTGCGTGAGCT
TGGAGCCCAGTTTGATTACTACATACCCAATCGGTTTACTGAAGGGTACGGTCCGAACGAAAACGCTCTCAGGTGGGCGA
AGGAAGAAGGCTATCAACTAGTGATCACCGTTGATACCGGAATTGCAGCTGTTCATGAAGCAGAGGTTGCGAAAGAGATC
GGACTAGATTTTATTGTGACGGATCATCATGAACCACCACCAGTGCTTCCAGATGCAGTGGCCATAATTAACCCGAAAAA
GCCTGGCTGCTCTTACCCGTGCAAACACTTAGCTGGTGTTGGGGTCGCATTTAAACTAGCCCATGCCCTATTGGAACGGG
TTCCTTATGATTTGCTCGATCTTGTGGCCATTGGCACGATTGCCGACTTAGTTCCTCTAACAGATGAAAATCGCTGGTTA
GCAAAAGAAGGATTAAAGGCGATCGAAACAACAACGAAGCCAGGAATTCAGGCGTTGAAAAAAGTTTGCGGTTTTCATGA
AGATAACGTTCAGGCGGAGCATGTCGGCTTTGGCATCGGTCCACGAATAAACGCCGCCGGACGCCTCGATTCGGCCAAAC
CGGCTGTTGAATTGTTGATCACCGATCAAGTAGAGACAGGGCAACAGCTAGCCGAACAAATCGATTTACTGAATAAAGAG
CGCCAAGCAATTGTTTCAGAGATTGCTGCTGAAGCAATTAATCTAGTAAAAGAATTATATCCACCAGAAGACAATCACGT
TCTCGTCGTCGGTGGACATGGTTGGAATCCTGGTGTCATTGGAATTGTCGCTTCCAGATTAGTGGAGACGTTTTACCGCC
CGACGATCGTATTAAGTTATGATGAAGAAAAAGGAATAGCCAAAGGGTCCGCGCGGAGCATTGAAGGGTTTGATATGTTC
CATGAGCTATCTAAAAATCGCGAGCTGTTGCCTCACTTTGGGGGACATCCAATGGCTGCGGGTTTGACGATGAGCCTTCA
AGATGTAGACGAACTGAGAAAACGGATGAATGCTCAAGCACGGGAGGCGTTACGACCGGAGGATTTTATACCGATCACAC
GCATTGATGTGCAAGCGTCGGTCGATGAGATCTCCGTTTCTACCATCGAAAAAATGAATGCTCTCGCACCTTATGGCGTT
GGCAATCCAGAACCGAAAGTCATGTTAACTGATGTGAAGATCGAAGGGATGCGGAAAATTGGCGCAGCATCAAATCATTT
AAAAGTGACGTTTCAACAAAACGGCACAACCCTTGACGGGGTCGGCTTTCATTTAGGCCATTTATCCGATGAGATTTCGC
CAACAGCTAGAGTTTCGGCCGTCGGAGTTTTGTCTATTAATGAATGGAACGGTCACGTCAAGCCACAATTAATGATTGAA
GATTTGGCGGTGAACGAATGGCAGCTCTTCGACTGGCGCAGTGCACGGGTCGACATATTGTCTGAGCGGATCATAGGCTT
GCCAGAAGAGAAACGACTGCTTATAGCCTTCCGTGAGCAAACAGTACAGGCGTTAGGTTTAGCCTCGTTTAACGTGTTCG
ATGGAAATGACCTAGCAAATATCCCTAGCATGGAAAATCGCTACGTTGTTTTACTCGATCCCCCGGTGGAATCAAATCAG
CTTTCCGCCCTTTTTGTTGAAGGAGGATGTCCAAGTCGGATTTATTCGATCTTCTATCAAGAGGAAGATTCGTATTTTTC
AACGAATCCGACGCGAGAGCATTTTCGCTGGTTTTATGGCTTTTTAATGAAGCAAAAACAGTTTAATCTTCATACCCATG
GAAAAAGGCTTGCCCATACCCGTGGTTGGACGGAAGAAACGATCTCATTCATGGCCAAGGTGTTTTTCGAACTAGGTTTT
GTTACAATAAAAGATGGGGTGATCACGCTTGTGGAGGCACCCGAAAAAAAAGGCTTGGATCAATCGCGAACATTTCGAAT
GAAACAAGAACAAGCAACGATTGAACAGCAATTTGTTTATTCGTCCTATGAAGAGTTAAAGCAATGGTTCACTCGAGCGA
TTCAAGAACGTAAGATCAAGGAGACGATTCAGTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(316-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KDH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

51.154

99.49

0.509

Multiple sequence alignment