Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   BSR20_RS01575 Genome accession   NZ_CP018189
Coordinates   287589..288278 (+) Length   229 a.a.
NCBI ID   WP_002886589.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 282589..293278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS10560 - 283529..283651 (+) 123 Protein_248 energy-coupling factor transporter transmembrane protein EcfT -
  BSR20_RS01555 (BSR20_01545) - 283741..284412 (-) 672 WP_002886585.1 potassium channel family protein -
  BSR20_RS01560 (BSR20_01550) - 284452..285816 (-) 1365 WP_002886586.1 TrkH family potassium uptake protein -
  BSR20_RS01565 (BSR20_01555) rsmG 285885..286598 (-) 714 WP_002886587.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BSR20_RS01570 (BSR20_01560) - 286897..287433 (+) 537 WP_045768772.1 DUF177 domain-containing protein -
  BSR20_RS01575 (BSR20_01565) covR 287589..288278 (+) 690 WP_002886589.1 response regulator transcription factor Regulator
  BSR20_RS01580 (BSR20_01570) covS 288275..289804 (+) 1530 WP_014633596.1 HAMP domain-containing histidine kinase Regulator
  BSR20_RS01585 (BSR20_01575) nrdR 289926..290405 (+) 480 WP_002886592.1 transcriptional regulator NrdR -
  BSR20_RS01590 (BSR20_01580) - 290402..291577 (+) 1176 WP_045771723.1 DnaD domain protein -
  BSR20_RS01595 (BSR20_01585) dnaI 291581..292483 (+) 903 WP_013990064.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26517.51 Da        Isoelectric Point: 4.6354

>NTDB_id=206898 BSR20_RS01575 WP_002886589.1 287589..288278(+) (covR) [Streptococcus salivarius strain ICDC3]
MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDIESAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=206898 BSR20_RS01575 WP_002886589.1 287589..288278(+) (covR) [Streptococcus salivarius strain ICDC3]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAAAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCAGACAACGGACGCGAAGGACTTGAAATGGCACTCGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTTGAAGTAACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGATTCAATCATGGACATTGTTGCTGGTTTGGACCGCGGTGCTGATGACTATATTGTAAAACCATTTGCGATTGA
AGAATTGTTGGCACGTATCCGTGCAACCTTCCGTCGCCAAGATATCGAATCTGCTAAGAATGCACCAGCAAAAGCATCAA
CTTATCGTGATTTGAAATTGGATGTTCAAAACCGTACAGTTGTTCGTGGTGATGAAGCAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTGAGCAATATGAACCAAGTGATGACCCGTGAGGAACTCTTGCTTCAAGTTTGGAAATA
TGATGACGCCATCGAAACAAACGTGGTAGATGTTTATATTCGTTATTTGCGTGGAAAAATCGACGTTCCAGGTAAGGAAT
CATATATTCAAACAGTACGAGGAATGGGTTACGTTATCCGTGAAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

99.563

100

0.996
  covR Lactococcus lactis subsp. lactis strain DGCC12653

68.421

99.563

0.681
  vicR Streptococcus mutans UA159

46.352

100

0.472
  micA Streptococcus pneumoniae Cp1015

44.156

100

0.445

Multiple sequence alignment