Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   BSR19_RS01650 Genome accession   NZ_CP018187
Coordinates   306927..307616 (+) Length   229 a.a.
NCBI ID   WP_002883757.1    Uniprot ID   A0AB33ZE44
Organism   Streptococcus salivarius strain ICDC2     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 301927..312616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS01625 (BSR19_01625) - 302159..302989 (+) 831 WP_060973169.1 energy-coupling factor transporter transmembrane component T family protein -
  BSR19_RS01630 (BSR19_01630) - 303078..303749 (-) 672 WP_002883759.1 potassium channel family protein -
  BSR19_RS01635 (BSR19_01635) - 303789..305153 (-) 1365 WP_081260152.1 TrkH family potassium uptake protein -
  BSR19_RS01640 (BSR19_01640) rsmG 305222..305935 (-) 714 WP_048673867.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  BSR19_RS01645 (BSR19_01645) - 306235..306771 (+) 537 WP_037600313.1 DUF177 domain-containing protein -
  BSR19_RS01650 (BSR19_01650) covR 306927..307616 (+) 690 WP_002883757.1 response regulator transcription factor Regulator
  BSR19_RS01655 (BSR19_01655) covS 307613..309142 (+) 1530 WP_060973171.1 HAMP domain-containing histidine kinase Regulator
  BSR19_RS01660 (BSR19_01660) nrdR 309264..309743 (+) 480 WP_002883820.1 transcriptional regulator NrdR -
  BSR19_RS01665 (BSR19_01665) - 309740..310915 (+) 1176 WP_060973172.1 DnaD domain protein -
  BSR19_RS01670 (BSR19_01670) dnaI 310919..311821 (+) 903 WP_002883792.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26501.51 Da        Isoelectric Point: 4.6354

>NTDB_id=206832 BSR19_RS01650 WP_002883757.1 306927..307616(+) (covR) [Streptococcus salivarius strain ICDC2]
MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDIEAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=206832 BSR19_RS01650 WP_002883757.1 306927..307616(+) (covR) [Streptococcus salivarius strain ICDC2]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAAAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCAGACAACGGACGTGAAGGACTTGAAATGGCACTCGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTTGAAGTAACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCCCGCGATTCAATCATGGACATTGTTGCTGGTTTGGACCGTGGTGCTGATGACTATATTGTAAAACCTTTTGCGATTGA
AGAACTATTGGCACGTATTCGTGCAACCTTCCGTCGCCAAGATATCGAAGCTGCTAAGAATGCACCAGCTAAGGCGTCAA
CTTATCGTGATTTGAAATTGGATGTTCAAAACCGTACAGTTGTTCGTGGTGATGAAGCAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTGAGCAATATGAACCAAGTGATGACCCGTGAGGAACTCTTGCTTCAAGTTTGGAAATA
TGATGATGCAATCGAAACAAACGTTGTAGATGTTTATATTCGTTACTTGCGTGGGAAAATCGATGTTCCAGGTAAGGAAT
CATACATTCAAACAGTGCGAGGAATGGGTTACGTTATCCGTGAAAAATGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

100

100

1
  covR Lactococcus lactis subsp. lactis strain DGCC12653

68.421

99.563

0.681
  vicR Streptococcus mutans UA159

45.923

100

0.467
  micA Streptococcus pneumoniae Cp1015

44.156

100

0.445

Multiple sequence alignment