Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   BMJ42_RS12035 Genome accession   NZ_CP018136
Coordinates   2175268..2175930 (-) Length   220 a.a.
NCBI ID   WP_000649971.1    Uniprot ID   A0A0B7MFB3
Organism   Streptococcus pneumoniae strain SP49     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170268..2180930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMJ42_RS12010 (BMJ42_02280) - 2170418..2170684 (-) 267 WP_001278167.1 Veg family protein -
  BMJ42_RS12015 (BMJ42_02281) dnaB 2170686..2172038 (-) 1353 WP_000852486.1 replicative DNA helicase -
  BMJ42_RS12020 (BMJ42_02282) rplI 2172082..2172534 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  BMJ42_RS12025 (BMJ42_02283) - 2172531..2174504 (-) 1974 WP_000715128.1 DHH family phosphoesterase -
  BMJ42_RS12030 (BMJ42_02284) hpf 2174640..2175188 (-) 549 WP_000599107.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BMJ42_RS12035 (BMJ42_02285) comFC/cflB 2175268..2175930 (-) 663 WP_000649971.1 ComF family protein Machinery gene
  BMJ42_RS12040 (BMJ42_02286) comFA/cflA 2175927..2177225 (-) 1299 WP_000867610.1 DEAD/DEAH box helicase Machinery gene
  BMJ42_RS12045 (BMJ42_02287) - 2177281..2177916 (+) 636 WP_000395739.1 YigZ family protein -
  BMJ42_RS12050 (BMJ42_02288) cysK 2178201..2179127 (+) 927 WP_000029874.1 cysteine synthase A -
  BMJ42_RS12055 (BMJ42_02289) tsf 2179248..2180288 (-) 1041 WP_000808063.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25241.10 Da        Isoelectric Point: 7.3688

>NTDB_id=206103 BMJ42_RS12035 WP_000649971.1 2175268..2175930(-) (comFC/cflB) [Streptococcus pneumoniae strain SP49]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSTKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=206103 BMJ42_RS12035 WP_000649971.1 2175268..2175930(-) (comFC/cflB) [Streptococcus pneumoniae strain SP49]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAACAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAAGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAACAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTAGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCCGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7MFB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

100

100

1
  comFC/cflB Streptococcus pneumoniae Rx1

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae D39

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae R6

99.545

100

0.995
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

91.364

100

0.914

Multiple sequence alignment