Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FSC454_RS08740 Genome accession   NZ_CP018093
Coordinates   1780904..1782412 (-) Length   502 a.a.
NCBI ID   WP_066046091.1    Uniprot ID   A0AAC9NQ37
Organism   Francisella hispaniensis FSC454 strain CCUG 58020     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1775904..1787412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC454_RS08720 (FSC454_08615) nusA 1777653..1779122 (-) 1470 WP_066046095.1 transcription termination factor NusA -
  FSC454_RS08725 (FSC454_08620) rimP 1779140..1779592 (-) 453 WP_014549007.1 ribosome maturation factor RimP -
  FSC454_RS08735 (FSC454_08630) hemE 1779815..1780849 (-) 1035 WP_014549008.1 uroporphyrinogen decarboxylase -
  FSC454_RS08740 (FSC454_08635) comM 1780904..1782412 (-) 1509 WP_066046091.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FSC454_RS08745 (FSC454_08640) - 1782414..1782608 (-) 195 WP_066046088.1 accessory factor UbiK family protein -
  FSC454_RS08750 (FSC454_08645) - 1782688..1784139 (-) 1452 WP_066046085.1 NADH-quinone oxidoreductase subunit N -
  FSC454_RS08755 (FSC454_08650) - 1784155..1785744 (-) 1590 WP_066046080.1 NADH-quinone oxidoreductase subunit M -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 55095.63 Da        Isoelectric Point: 8.8206

>NTDB_id=205713 FSC454_RS08740 WP_066046091.1 1780904..1782412(-) (comM) [Francisella hispaniensis FSC454 strain CCUG 58020]
MSLAVLKSRAQLGIEAPLVSIEVHLSNGLPGLSIVGLPEAAVKESKDRVRSAIINSGFSFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQVNIIKDIDEYEFAGELSLSGELRKISSAIPMAIKCVEENKKLIVPIQNDKEIGLVESVQAYSFDS
LNSVIEFLSGTEKEPIKPNIEVDFSKLYQDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPTLDK
KEALSSAMIASIKGESGIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
TGSVNISRARCQVEYPANFQLIAAMNPCPCGYLGSQFKECTDSIQAIRRYQSKLSGPLLDRIDLHVEVLELAKEDLTNQQ
LRGEKSSIVRERVKRARDRQVSRQGKINAMLSSKELDKVCNLNDETKKMLTLAIEKLGLSARGYYKILKVARTIADLNST
KNIDKVAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=205713 FSC454_RS08740 WP_066046091.1 1780904..1782412(-) (comM) [Francisella hispaniensis FSC454 strain CCUG 58020]
ATGTCTTTAGCTGTTTTAAAGAGTCGAGCCCAACTTGGTATAGAGGCTCCTTTAGTTTCTATTGAAGTTCATCTTTCAAA
TGGTTTGCCAGGACTATCTATAGTTGGTCTGCCAGAGGCAGCTGTTAAAGAGAGTAAAGATCGTGTAAGAAGTGCGATCA
TTAATTCAGGCTTTAGCTTTCCTAATAAGCGTATAACAATCAACCTTGCACCAGCTGATTTACCCAAAAGTAGCGGTAGA
TTTGATTTGCCGATAGCATTAGGTATCTTATATGCTTCTGGACAAGTAAATATTATCAAAGATATCGATGAGTATGAGTT
TGCTGGTGAGTTATCTTTGAGTGGTGAGTTGAGGAAAATATCTAGTGCTATACCAATGGCTATTAAGTGTGTCGAGGAAA
ATAAAAAACTTATTGTGCCAATACAAAATGATAAAGAGATTGGTTTAGTTGAGTCAGTTCAAGCCTATAGCTTTGATAGC
TTAAATAGCGTTATAGAGTTTTTATCAGGAACTGAAAAAGAGCCAATAAAGCCAAATATAGAGGTTGACTTTAGTAAGCT
ATACCAAGATTTAGAAGATGTCAAAGGACAATATCAAGCCAAAAGAGCATTAGAGATTGCTGCGGCTGGTGGTCACAATA
TCCTTTTAGTAGGTCCTCCTGGTACCGGCAAGACAATGTTGGCAAGTAGACTAAATTCAATTTTACCAACGTTAGATAAG
AAAGAAGCGCTCTCATCAGCAATGATTGCATCAATCAAAGGAGAATCGGGAATAGCTGAAAGCTTTTATAAAAGGCCATT
TCGTCATCCACATCATACCTCATCAGGGGTGTCCTTGGTTGGTGGTGGTAGTAATCCAATGCCTGGTGAGATTTCTTTAG
CACATAATGGTGTGCTTTTTCTTGATGAGTTACCAGAATTTGATCGTAAGGTTTTAGAAGTATTGCGTGAGCCTTTAGAG
ACAGGAAGTGTCAATATTTCTAGAGCTAGGTGTCAAGTTGAATATCCAGCTAACTTTCAGTTAATAGCAGCAATGAATCC
ATGTCCATGTGGATATTTAGGCTCACAATTTAAAGAGTGTACTGACTCAATCCAAGCGATTAGAAGATATCAAAGTAAGT
TATCTGGGCCACTTCTAGATAGGATAGATCTTCATGTTGAAGTTCTTGAGCTTGCAAAAGAGGATCTAACAAATCAGCAG
CTAAGAGGCGAGAAAAGCAGCATAGTTAGAGAACGAGTTAAAAGAGCTCGAGATAGACAAGTCTCTCGACAGGGTAAGAT
TAATGCAATGCTATCTAGTAAAGAGCTTGATAAGGTTTGTAATCTTAATGATGAAACAAAAAAAATGCTTACGCTAGCTA
TAGAAAAGCTTGGACTATCAGCAAGAGGGTATTATAAAATACTCAAAGTTGCTAGAACCATAGCAGATCTTAATAGTACT
AAAAATATTGATAAAGTAGCTATTCAAGAAGCTATTAGTTATAGAAAAATGGATAAGTTTATCAAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.778

100

0.53
  comM Haemophilus influenzae Rd KW20

51.969

100

0.526
  comM Glaesserella parasuis strain SC1401

52.071

100

0.526
  comM Vibrio cholerae strain A1552

52.183

100

0.524
  comM Legionella pneumophila str. Paris

51.004

99.203

0.506
  comM Legionella pneumophila strain ERS1305867

51.004

99.203

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

49.197

99.203

0.488

Multiple sequence alignment