Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DN94_05045 Genome accession   CP007565
Coordinates   973745..974425 (-) Length   226 a.a.
NCBI ID   AHX75059.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 968745..979425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_05015 - 968969..969640 (-) 672 AHX75053.1 GTP pyrophosphokinase -
  DN94_05020 - 969750..970322 (+) 573 AHX75054.1 adenylate cyclase -
  DN94_05025 - 970498..971472 (+) 975 AHX75055.1 ribose-phosphate pyrophosphokinase -
  DN94_05030 - 971476..972591 (+) 1116 AHX75056.1 cysteine desulfurase -
  DN94_05035 - 972593..972940 (+) 348 AHX75057.1 cysteine desulfurase -
  DN94_05040 - 973095..973733 (+) 639 AHX75058.1 Rex family transcripional regulator -
  DN94_05045 radC 973745..974425 (-) 681 AHX75059.1 hypothetical protein Machinery gene
  DN94_05055 - 975745..977022 (-) 1278 AHX75060.1 6-phospho-beta-glucosidase -
  DN94_05060 - 977243..977776 (-) 534 AHX75061.1 PadR family transcriptional regulator -
  DN94_05065 - 977766..978134 (-) 369 AHX75062.1 hypothetical protein -
  DN94_05075 - 978638..979276 (-) 639 AHX75063.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25809.09 Da        Isoelectric Point: 8.9128

>NTDB_id=20562 DN94_05045 AHX75059.1 973745..974425(-) (radC) [Streptococcus agalactiae strain 138spar]
MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKGIGQVKS
VEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRTIFIGTVRRSVAEPREILH
YACKNMATSLIIIHNHPSGSPKPSESDLSFTKKIKRSGDHLGIICLDHIIVGKNKYYSFREEADIL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=20562 DN94_05045 AHX75059.1 973745..974425(-) (radC) [Streptococcus agalactiae strain 138spar]
ATGTACCATATTGAATTAAAAAAGGAAGCTTTACTACCAAGAGAACGCCTAGTTGATTTAGGCGCAGATAGATTGAGTAA
TCAGGAGTTATTAGCCATTCTCTTACGTACAGGTATTAAAGAAAAACCTGTTCTGGAAATTTCAACACAAATTTTAGAAA
ACATAAGCAGTTTAGCAGATTTTGGTCAATTATCCTTACAGGAGTTGCAATCCATTAAAGGAATCGGTCAGGTTAAATCC
GTCGAAATAAAAGCTATGCTAGAACTAGCAAAACGGATTCACAAAGCTGAATATGATCGTAAAGAGCAAATTTTAAGTAG
TGAACAATTAGCGAGGAAAATGATGCTCGAATTAGGGGATAAAAAACAAGAACATTTAGTAGCTATTTATATGGATACAC
AAAATCGTATTATCGAACAGAGAACTATTTTTATTGGTACTGTACGTCGTTCAGTAGCAGAGCCAAGAGAAATTCTACAT
TATGCTTGTAAAAACATGGCAACTTCTTTGATTATCATACATAATCATCCCTCAGGTTCTCCAAAACCCAGTGAAAGTGA
TTTAAGTTTCACTAAAAAAATAAAACGATCAGGTGATCATCTGGGAATTATCTGCCTAGATCACATCATCGTTGGAAAAA
ATAAATATTATAGTTTTCGAGAAGAAGCAGATATTTTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

58.407

100

0.584
  radC Streptococcus pneumoniae R6

57.965

100

0.58
  radC Streptococcus pneumoniae D39

57.965

100

0.58
  radC Streptococcus gordonii str. Challis substr. CH1

57.965

100

0.58
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.128

93.363

0.403

Multiple sequence alignment