Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   GT3921_RS07520 Genome accession   NZ_CP018058
Coordinates   1474443..1474739 (+) Length   98 a.a.
NCBI ID   WP_025948951.1    Uniprot ID   -
Organism   Geobacillus thermocatenulatus strain KCTC 3921     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469443..1479739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT3921_RS07495 (GT3921_07275) - 1469662..1470795 (+) 1134 WP_047752795.1 SAM-dependent methyltransferase -
  GT3921_RS07500 (GT3921_07280) - 1470879..1471121 (-) 243 WP_008879854.1 DUF2626 family protein -
  GT3921_RS07505 (GT3921_07285) - 1471274..1471972 (-) 699 WP_025948948.1 helix-turn-helix domain-containing protein -
  GT3921_RS07510 (GT3921_07290) comGA 1472165..1473238 (+) 1074 WP_025948949.1 competence type IV pilus ATPase ComGA Machinery gene
  GT3921_RS07515 (GT3921_07295) comGB 1473235..1474263 (+) 1029 WP_047752793.1 competence type IV pilus assembly protein ComGB -
  GT3921_RS07520 (GT3921_07300) comGC 1474443..1474739 (+) 297 WP_025948951.1 competence type IV pilus major pilin ComGC Machinery gene
  GT3921_RS07525 (GT3921_07305) comGD 1474729..1475166 (+) 438 WP_025948952.1 competence type IV pilus minor pilin ComGD -
  GT3921_RS07530 (GT3921_07310) - 1475150..1475476 (+) 327 WP_025948953.1 type II secretion system protein -
  GT3921_RS07535 (GT3921_07315) comGF 1475455..1475901 (+) 447 WP_047752796.1 competence type IV pilus minor pilin ComGF -
  GT3921_RS07540 (GT3921_07320) comGG 1475977..1476366 (+) 390 WP_025948955.1 competence type IV pilus minor pilin ComGG -
  GT3921_RS07545 (GT3921_07325) - 1476412..1476591 (+) 180 WP_011231910.1 YqzE family protein -
  GT3921_RS07550 (GT3921_07330) - 1476694..1477488 (-) 795 WP_025948957.1 YqhG family protein -
  GT3921_RS07555 (GT3921_07335) - 1477475..1479139 (-) 1665 WP_025948958.1 SNF2-related protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10732.54 Da        Isoelectric Point: 6.7057

>NTDB_id=205478 GT3921_RS07520 WP_025948951.1 1474443..1474739(+) (comGC) [Geobacillus thermocatenulatus strain KCTC 3921]
MNQKGFTLIEMLIVMMVISVLLLIAIPNITKHNSMINSKGCEAFLNTVQAQVKAYEMEHDKIPTVQELLAGRYIKSDKCP
NGHAIQISANGDVSESGS

Nucleotide


Download         Length: 297 bp        

>NTDB_id=205478 GT3921_RS07520 WP_025948951.1 1474443..1474739(+) (comGC) [Geobacillus thermocatenulatus strain KCTC 3921]
ATGAATCAAAAAGGATTTACATTGATCGAAATGCTGATCGTGATGATGGTGATTTCTGTTCTGCTTCTGATTGCCATTCC
GAATATAACCAAGCACAACAGCATGATCAATTCGAAAGGATGCGAGGCGTTTTTGAACACGGTGCAAGCGCAGGTGAAAG
CGTATGAGATGGAACACGACAAAATTCCGACGGTGCAGGAATTGCTCGCTGGCCGCTATATCAAGTCGGACAAATGTCCA
AACGGTCACGCGATCCAAATCAGCGCGAACGGCGATGTGAGTGAAAGTGGCTCGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

52.747

92.857

0.49
  comGC Staphylococcus aureus MW2

41.935

94.898

0.398
  comGC Staphylococcus aureus N315

41.935

94.898

0.398
  comYC Streptococcus suis isolate S10

42.857

85.714

0.367

Multiple sequence alignment