Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | GT3921_RS07510 | Genome accession | NZ_CP018058 |
| Coordinates | 1472165..1473238 (+) | Length | 357 a.a. |
| NCBI ID | WP_025948949.1 | Uniprot ID | - |
| Organism | Geobacillus thermocatenulatus strain KCTC 3921 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1467165..1478238
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GT3921_RS07480 (GT3921_07260) | - | 1467170..1468330 (+) | 1161 | WP_047752792.1 | M14 family metallocarboxypeptidase | - |
| GT3921_RS07485 (GT3921_07265) | - | 1468365..1468541 (-) | 177 | WP_011231921.1 | DUF2759 domain-containing protein | - |
| GT3921_RS07490 (GT3921_07270) | - | 1468710..1469342 (+) | 633 | WP_025948946.1 | MBL fold metallo-hydrolase | - |
| GT3921_RS07495 (GT3921_07275) | - | 1469662..1470795 (+) | 1134 | WP_047752795.1 | SAM-dependent methyltransferase | - |
| GT3921_RS07500 (GT3921_07280) | - | 1470879..1471121 (-) | 243 | WP_008879854.1 | DUF2626 family protein | - |
| GT3921_RS07505 (GT3921_07285) | - | 1471274..1471972 (-) | 699 | WP_025948948.1 | helix-turn-helix domain-containing protein | - |
| GT3921_RS07510 (GT3921_07290) | comGA | 1472165..1473238 (+) | 1074 | WP_025948949.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| GT3921_RS07515 (GT3921_07295) | comGB | 1473235..1474263 (+) | 1029 | WP_047752793.1 | competence type IV pilus assembly protein ComGB | - |
| GT3921_RS07520 (GT3921_07300) | comGC | 1474443..1474739 (+) | 297 | WP_025948951.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GT3921_RS07525 (GT3921_07305) | comGD | 1474729..1475166 (+) | 438 | WP_025948952.1 | competence type IV pilus minor pilin ComGD | - |
| GT3921_RS07530 (GT3921_07310) | - | 1475150..1475476 (+) | 327 | WP_025948953.1 | type II secretion system protein | - |
| GT3921_RS07535 (GT3921_07315) | comGF | 1475455..1475901 (+) | 447 | WP_047752796.1 | competence type IV pilus minor pilin ComGF | - |
| GT3921_RS07540 (GT3921_07320) | comGG | 1475977..1476366 (+) | 390 | WP_025948955.1 | competence type IV pilus minor pilin ComGG | - |
| GT3921_RS07545 (GT3921_07325) | - | 1476412..1476591 (+) | 180 | WP_011231910.1 | YqzE family protein | - |
| GT3921_RS07550 (GT3921_07330) | - | 1476694..1477488 (-) | 795 | WP_025948957.1 | YqhG family protein | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39592.10 Da Isoelectric Point: 8.3912
>NTDB_id=205477 GT3921_RS07510 WP_025948949.1 1472165..1473238(+) (comGA) [Geobacillus thermocatenulatus strain KCTC 3921]
MLNEIEQTANRLLAEAVQRRASDLHLVPRRRDAAVRLRLDGMLVDVGALPKETAERLIVHFKFLAGMDIGERRRPQSGAM
EVAEFGETVYLRLSTLPTLYDESLVIRLLPQRLPLPLRELSLFFHSTARLFSFMQHPQGLVLLTGPTGSGKTTTLYTLLD
LCQAERQRNIITLEDPIEKQNERLLQVQINEKAGITYAVGLKAALRHDPDVLMVGEIRDHDTAAIAVRSALSGHLVVSTM
HAADAVGAVYRLHEFGIPLGDLAETLLAVSAQRLVELCCPLCGDDCHPSCGRLGRRRRTAVYELLCGSALEDVIHFLSNG
RGKPKRSYMTLARLIRKGIALGYLPVRMLELVGGGER
MLNEIEQTANRLLAEAVQRRASDLHLVPRRRDAAVRLRLDGMLVDVGALPKETAERLIVHFKFLAGMDIGERRRPQSGAM
EVAEFGETVYLRLSTLPTLYDESLVIRLLPQRLPLPLRELSLFFHSTARLFSFMQHPQGLVLLTGPTGSGKTTTLYTLLD
LCQAERQRNIITLEDPIEKQNERLLQVQINEKAGITYAVGLKAALRHDPDVLMVGEIRDHDTAAIAVRSALSGHLVVSTM
HAADAVGAVYRLHEFGIPLGDLAETLLAVSAQRLVELCCPLCGDDCHPSCGRLGRRRRTAVYELLCGSALEDVIHFLSNG
RGKPKRSYMTLARLIRKGIALGYLPVRMLELVGGGER
Nucleotide
Download Length: 1074 bp
>NTDB_id=205477 GT3921_RS07510 WP_025948949.1 1472165..1473238(+) (comGA) [Geobacillus thermocatenulatus strain KCTC 3921]
GTGCTGAACGAGATCGAACAAACGGCAAACCGCCTTCTCGCCGAAGCGGTGCAGCGCCGCGCCTCGGATCTCCACCTCGT
TCCGCGCCGCCGTGATGCCGCCGTTCGTCTTCGGCTCGATGGCATGCTTGTCGACGTTGGCGCTCTTCCGAAAGAAACGG
CGGAACGCCTCATCGTCCACTTTAAATTTTTAGCCGGCATGGATATCGGGGAACGACGCCGTCCGCAAAGCGGCGCCATG
GAAGTGGCGGAGTTTGGGGAAACGGTGTATTTGCGTTTATCGACATTGCCGACGCTCTACGACGAAAGTCTTGTCATTCG
ACTTCTGCCGCAGCGCCTCCCACTGCCGCTTCGCGAACTATCCTTATTCTTCCACTCCACCGCACGATTATTTTCCTTCA
TGCAGCATCCGCAAGGACTCGTGCTGTTGACCGGTCCGACGGGGTCGGGAAAAACGACGACCCTGTACACCCTTCTTGAT
CTTTGCCAAGCGGAAAGGCAACGCAACATCATCACGCTTGAAGATCCAATCGAAAAACAGAACGAACGACTGTTGCAAGT
GCAAATCAATGAAAAAGCAGGCATCACGTACGCCGTTGGGTTAAAAGCGGCGCTGCGCCATGACCCGGATGTGTTGATGG
TCGGCGAGATCCGCGATCATGACACGGCGGCCATTGCCGTCCGTTCAGCGTTGAGCGGCCATTTGGTCGTCTCGACGATG
CACGCCGCCGATGCAGTCGGCGCCGTCTACCGGCTGCATGAATTCGGCATTCCGCTCGGCGATTTGGCTGAGACGCTGCT
TGCCGTCTCTGCCCAGCGGCTTGTCGAGCTTTGCTGCCCGCTGTGCGGCGACGATTGCCATCCATCGTGCGGCCGTCTTG
GGCGCCGCCGGCGCACGGCTGTTTATGAGTTGCTTTGCGGTTCAGCCCTGGAGGACGTGATTCATTTTCTCTCCAATGGG
AGAGGGAAGCCAAAGCGCTCTTATATGACGCTGGCTCGCTTGATCCGCAAGGGGATTGCGCTTGGCTACCTGCCCGTCCG
CATGCTTGAGCTCGTCGGAGGGGGAGAAAGATGA
GTGCTGAACGAGATCGAACAAACGGCAAACCGCCTTCTCGCCGAAGCGGTGCAGCGCCGCGCCTCGGATCTCCACCTCGT
TCCGCGCCGCCGTGATGCCGCCGTTCGTCTTCGGCTCGATGGCATGCTTGTCGACGTTGGCGCTCTTCCGAAAGAAACGG
CGGAACGCCTCATCGTCCACTTTAAATTTTTAGCCGGCATGGATATCGGGGAACGACGCCGTCCGCAAAGCGGCGCCATG
GAAGTGGCGGAGTTTGGGGAAACGGTGTATTTGCGTTTATCGACATTGCCGACGCTCTACGACGAAAGTCTTGTCATTCG
ACTTCTGCCGCAGCGCCTCCCACTGCCGCTTCGCGAACTATCCTTATTCTTCCACTCCACCGCACGATTATTTTCCTTCA
TGCAGCATCCGCAAGGACTCGTGCTGTTGACCGGTCCGACGGGGTCGGGAAAAACGACGACCCTGTACACCCTTCTTGAT
CTTTGCCAAGCGGAAAGGCAACGCAACATCATCACGCTTGAAGATCCAATCGAAAAACAGAACGAACGACTGTTGCAAGT
GCAAATCAATGAAAAAGCAGGCATCACGTACGCCGTTGGGTTAAAAGCGGCGCTGCGCCATGACCCGGATGTGTTGATGG
TCGGCGAGATCCGCGATCATGACACGGCGGCCATTGCCGTCCGTTCAGCGTTGAGCGGCCATTTGGTCGTCTCGACGATG
CACGCCGCCGATGCAGTCGGCGCCGTCTACCGGCTGCATGAATTCGGCATTCCGCTCGGCGATTTGGCTGAGACGCTGCT
TGCCGTCTCTGCCCAGCGGCTTGTCGAGCTTTGCTGCCCGCTGTGCGGCGACGATTGCCATCCATCGTGCGGCCGTCTTG
GGCGCCGCCGGCGCACGGCTGTTTATGAGTTGCTTTGCGGTTCAGCCCTGGAGGACGTGATTCATTTTCTCTCCAATGGG
AGAGGGAAGCCAAAGCGCTCTTATATGACGCTGGCTCGCTTGATCCGCAAGGGGATTGCGCTTGGCTACCTGCCCGTCCG
CATGCTTGAGCTCGTCGGAGGGGGAGAAAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
50.581 |
96.359 |
0.487 |