Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KPH11_RS18180 Genome accession   NZ_CP018056
Coordinates   3674639..3676159 (+) Length   506 a.a.
NCBI ID   WP_025368567.1    Uniprot ID   A0A6A8EPE7
Organism   Klebsiella pneumoniae subsp. pneumoniae strain H11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3669639..3681159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPH11_RS18160 (KPH11_18020) ilvE 3671199..3672128 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  KPH11_RS18165 (KPH11_18025) ilvM 3672145..3672402 (-) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  KPH11_RS18170 (KPH11_18030) ilvG 3672399..3674045 (-) 1647 WP_002883142.1 acetolactate synthase 2 catalytic subunit -
  KPH11_RS27595 ilvX 3674048..3674101 (-) 54 WP_201281575.1 peptide IlvX -
  KPH11_RS18175 ilvL 3674186..3674284 (-) 99 WP_001311244.1 ilv operon leader peptide -
  KPH11_RS18180 (KPH11_18040) comM 3674639..3676159 (+) 1521 WP_025368567.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KPH11_RS18185 (KPH11_18045) - 3676184..3676522 (-) 339 WP_004146520.1 DUF413 domain-containing protein -
  KPH11_RS18190 (KPH11_18050) hdfR 3676641..3677462 (+) 822 WP_002883081.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55141.51 Da        Isoelectric Point: 8.4774

>NTDB_id=205406 KPH11_RS18180 WP_025368567.1 3674639..3676159(+) (comM) [Klebsiella pneumoniae subsp. pneumoniae strain H11]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCGRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=205406 KPH11_RS18180 WP_025368567.1 3674639..3676159(+) (comM) [Klebsiella pneumoniae subsp. pneumoniae strain H11]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAATCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAACCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCGCTGCCGCCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCGGCCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATTGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8EPE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.883

100

0.605
  comM Glaesserella parasuis strain SC1401

59.528

100

0.599
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.325

99.605

0.591
  comM Legionella pneumophila str. Paris

50

98.419

0.492
  comM Legionella pneumophila strain ERS1305867

50

98.419

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.291

100

0.445

Multiple sequence alignment