Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BM528_RS17955 Genome accession   NZ_CP018031
Coordinates   4069757..4071271 (+) Length   504 a.a.
NCBI ID   WP_071981016.1    Uniprot ID   A0AAC9NWK7
Organism   Alteromonas sp. RW2A1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4064757..4076271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BM528_RS17940 (BM528_17695) ilvA 4064982..4066520 (-) 1539 WP_071981013.1 threonine ammonia-lyase, biosynthetic -
  BM528_RS17945 (BM528_17700) ilvD 4066517..4068367 (-) 1851 WP_071981014.1 dihydroxy-acid dehydratase -
  BM528_RS17950 (BM528_17705) - 4068943..4069560 (+) 618 WP_071981015.1 trimeric intracellular cation channel family protein -
  BM528_RS17955 (BM528_17710) comM 4069757..4071271 (+) 1515 WP_071981016.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BM528_RS17960 (BM528_17715) ilvY 4071272..4072135 (-) 864 WP_071981017.1 HTH-type transcriptional activator IlvY -
  BM528_RS17965 (BM528_17720) ilvC 4072291..4073769 (+) 1479 WP_071981406.1 ketol-acid reductoisomerase -
  BM528_RS17970 (BM528_17725) - 4073852..4075099 (-) 1248 WP_071981018.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53998.87 Da        Isoelectric Point: 6.5064

>NTDB_id=205169 BM528_RS17955 WP_071981016.1 4069757..4071271(+) (comM) [Alteromonas sp. RW2A1]
MSMAVVKTFAGQGLSAPEISVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFDFPAKRITVNLAPADIPKFGGR
FDLPIAVGILVASGYLSDTSLLNIAFVGELALNGEIKPVGGLIPVVIAAANEDIPLIYPGDNDVEAALVSHAARLPAFDL
LSVYEHLSGNKKLPVGQPFTPSSSTINNLGWDDIIGQEQAKRALIIAACGAHNLLMVGPPGTGKSLLASRMLALLPPLTE
EEALEVASVYSVKGEKLNPEKFMHRHLRSPHHTSSAVALTGGGSQPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHISRASGSATYPANFQLVAAMNPSPTGDIDDNRLSPQQQLNYLNRLSGPLLDRIDIQVEVPRLPEYDLPSAKKSTD
DSIHAVKKDVAETRHIQLMRQGKPNAALNAAELASACKVSDSDLNFLKAAAKQLNLSMRVFHRTLKVARTIADLNREDNV
TRAHISEALGYRALDNLIKQLSSC

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=205169 BM528_RS17955 WP_071981016.1 4069757..4071271(+) (comM) [Alteromonas sp. RW2A1]
ATGAGTATGGCAGTGGTGAAAACATTTGCGGGGCAGGGGTTATCTGCGCCAGAAATTTCGGTGGAAATTCACCTAGCTAA
CGGTTTGCCTGCATTTCAGCTAGTGGGTATGGCAGAAACGAGTGTTAAAGAAGCCCGCGAACGCGTGCGAAGCGCATTAA
TTAACAGCGGCTTCGACTTTCCCGCCAAACGGATAACAGTTAATTTAGCTCCTGCAGATATTCCTAAGTTCGGAGGCCGA
TTTGATTTACCCATTGCGGTGGGTATTTTAGTGGCTTCTGGTTACCTCTCAGACACCAGTTTGCTAAATATCGCTTTTGT
TGGAGAACTTGCACTAAACGGCGAAATAAAGCCCGTAGGGGGTCTTATCCCCGTTGTTATCGCAGCGGCAAATGAAGATA
TCCCCCTTATTTACCCGGGAGATAACGATGTAGAAGCTGCGTTAGTATCGCACGCAGCTCGACTGCCCGCTTTTGATTTG
CTCTCTGTTTACGAGCATTTAAGTGGCAATAAAAAACTGCCAGTTGGACAACCATTTACGCCTTCCTCCTCGACAATCAA
TAACCTTGGGTGGGACGATATCATTGGCCAAGAACAAGCTAAGCGAGCACTTATCATTGCAGCTTGCGGAGCACATAATT
TGTTAATGGTAGGCCCACCTGGTACAGGAAAAAGCTTACTGGCAAGCCGTATGCTGGCTTTATTGCCGCCTCTCACCGAA
GAAGAGGCTCTTGAAGTTGCTTCTGTATACTCGGTAAAAGGCGAAAAACTTAACCCCGAAAAGTTTATGCATAGGCATTT
GCGTTCCCCGCATCATACTAGCTCTGCTGTTGCATTGACTGGAGGTGGCTCTCAGCCCGTTCCAGGCGAAATATCCTTAG
CCCACAACGGGATACTTTTTCTAGATGAATTGCCTGAATTTGGCCGTAAAGCATTAGACGTGTTGCGCGAACCTCTAGAG
ACCGGTGATGTACATATCTCTCGAGCATCTGGCAGCGCGACTTACCCTGCAAACTTTCAGCTTGTGGCGGCAATGAACCC
AAGTCCAACCGGCGATATAGACGATAACCGCCTATCTCCCCAGCAACAGCTTAACTACCTCAATAGACTCTCGGGGCCGC
TGTTAGACAGAATAGATATTCAAGTGGAAGTGCCTCGATTACCAGAATACGACCTACCTTCGGCCAAAAAAAGTACCGAT
GACTCTATTCACGCTGTAAAAAAGGACGTTGCAGAAACCCGTCATATACAGCTTATGAGGCAGGGCAAACCTAATGCTGC
GCTCAATGCTGCAGAGCTTGCTTCTGCGTGTAAGGTAAGCGATAGCGACCTTAATTTTTTAAAGGCTGCAGCCAAACAGC
TAAACTTATCTATGCGCGTTTTTCATCGTACCTTGAAAGTAGCCAGAACCATTGCCGATCTCAACCGCGAAGATAATGTA
ACCCGTGCTCACATTAGTGAAGCGTTAGGATACAGAGCCTTAGACAACCTTATAAAACAATTGAGTAGCTGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.745

100

0.534
  comM Vibrio campbellii strain DS40M4

52.268

100

0.526
  comM Vibrio cholerae strain A1552

51.976

100

0.522
  comM Glaesserella parasuis strain SC1401

51.779

100

0.52
  comM Legionella pneumophila str. Paris

45.691

99.008

0.452
  comM Legionella pneumophila strain ERS1305867

45.691

99.008

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.435

Multiple sequence alignment