Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BM526_RS18465 Genome accession   NZ_CP018029
Coordinates   4279901..4281415 (+) Length   504 a.a.
NCBI ID   WP_071970360.1    Uniprot ID   -
Organism   Alteromonas mediterranea strain RG65     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4274901..4286415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BM526_RS18450 (BM526_18355) ilvA 4275203..4276750 (-) 1548 WP_071970355.1 threonine ammonia-lyase, biosynthetic -
  BM526_RS18455 (BM526_18360) ilvD 4276750..4278600 (-) 1851 WP_071970358.1 dihydroxy-acid dehydratase -
  BM526_RS18460 (BM526_18365) - 4279029..4279646 (+) 618 WP_071960278.1 trimeric intracellular cation channel family protein -
  BM526_RS18465 (BM526_18370) comM 4279901..4281415 (+) 1515 WP_071970360.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BM526_RS18470 (BM526_18375) ilvY 4281453..4282325 (-) 873 WP_071970362.1 HTH-type transcriptional activator IlvY -
  BM526_RS18475 (BM526_18380) ilvC 4282483..4283961 (+) 1479 WP_012518723.1 ketol-acid reductoisomerase -
  BM526_RS18480 (BM526_18385) - 4284111..4285361 (-) 1251 WP_196772453.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54144.76 Da        Isoelectric Point: 6.1972

>NTDB_id=205151 BM526_RS18465 WP_071970360.1 4279901..4281415(+) (comM) [Alteromonas mediterranea strain RG65]
MGMAVVKTFAGQGVTAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDTSLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRFPAFDL
LSVYEHLTGNKKLAKGQPFASHSPNKAQTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGETLHAERFLTRHLRSPHHTSSAIALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERANMPN
DSLFDTRQQVIEARHKQQARQGKPNGALHAGELADICLLDDADLRFLQAAAKQLNLSMRVFHRTLKVARTIADLEGSQGV
LRAHIAEALGYRALDNLIKQLSAN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=205151 BM526_RS18465 WP_071970360.1 4279901..4281415(+) (comM) [Alteromonas mediterranea strain RG65]
ATGGGCATGGCTGTGGTTAAAACTTTTGCAGGCCAAGGCGTTACTGCGCCAGAGGTGAGCGTAGAAATTCATTTGGCTAA
CGGCTTACCCGCCTTTCAACTAGTGGGCATGGCTGAAACCAGTGTAAAGGAAGCCCGTGAGCGTGTGCGCAGCGCCCTTA
TCAATAGTGGCTTTGAATTTCCTGCCAAACGAATAACCGTTAACTTAGCCCCCGCTGATATTCCTAAGTTCGGCGGGCGA
TTCGACCTTCCCATCGCCGTAGGTATACTCGCCGCTTCCGGCTATATTTCAGATACAAGCTTATTAAATATTGCCTTTGT
GGGCGAGCTTGCTTTAAACGGAGAAATAAAGCCGGTTAACGGCCTTATTCCCGTCGTAATGACAGCCGCAAACGAAGATA
TTGCTTTGGTTTACCCTGGTGACAATGACGTTGAAGCCGCACTTGTATCCCACGCTACGCGCTTTCCCGCGTTTGATTTA
CTGTCTGTTTATGAACACCTTACTGGCAATAAGAAATTGGCAAAGGGGCAGCCTTTTGCTTCACATTCGCCTAATAAGGC
GCAAACAGGTTGGGATGATATTATCGGGCAGGAACAGGCTAAACGGGCGTTAATCATTGCCGCGAGTGGTGCGCATAATC
TACTAATGGTGGGGCCTCCCGGCACGGGAAAGAGCCTGCTAGCTAGCCGTATGCTCTCGCTACTACCAGATATGAGCGAA
GAAGAGGCCCTTGAAGTAGCCGCCATTCATTCGGTAAAAGGTGAAACCTTACACGCCGAGCGCTTTTTAACGCGTCATTT
GCGCTCCCCCCATCACACAAGTTCTGCGATAGCGCTCACTGGCGGTGGTTCTAACCCGGTGCCGGGAGAAATTTCACTGG
CCCACAACGGCATCCTATTTTTAGACGAACTCCCCGAATTTGGCCGAAAAGCGCTGGACGTATTGCGCGAACCGCTTGAA
ACTGGCGACGTACACTTGTCGAGAGCTTCAGGAAGCGCTACGTACCCGGCTAATTTTCAGTTAGTAGCAGCGATGAACCC
TAGCCCGACAGGTGATATTGATGATAATCGTCTGACACCACAGCAGCAGCTTAACTACTTAAATCGCCTCTCTGGGCCGC
TTCTCGATAGAATAGACATCCAGGTAGAAGTGCCCCGTTTGCCCGACTACGACCTGCCAGAACGGGCCAATATGCCTAAC
GATTCATTATTTGACACCCGCCAACAGGTTATTGAAGCAAGGCATAAACAACAAGCGCGCCAAGGTAAACCTAACGGTGC
GCTGCATGCGGGCGAGCTTGCCGATATTTGCCTACTTGATGATGCAGACTTACGCTTTTTACAGGCAGCCGCGAAACAGC
TGAATTTATCCATGCGTGTGTTTCACCGCACGCTAAAGGTGGCCAGAACCATTGCCGATCTGGAAGGGTCACAGGGCGTA
CTTCGTGCTCATATCGCTGAAGCGTTAGGCTATCGCGCATTAGACAATTTGATAAAACAACTTAGTGCTAATTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.755

100

0.54
  comM Vibrio campbellii strain DS40M4

53.229

100

0.54
  comM Glaesserella parasuis strain SC1401

51.186

100

0.514
  comM Haemophilus influenzae Rd KW20

50.984

100

0.514
  comM Legionella pneumophila str. Paris

45.968

98.413

0.452
  comM Legionella pneumophila strain ERS1305867

45.968

98.413

0.452
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.7

100

0.419

Multiple sequence alignment