Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BM524_RS18120 Genome accession   NZ_CP018024
Coordinates   4245842..4247356 (+) Length   504 a.a.
NCBI ID   WP_071960279.1    Uniprot ID   A0AAC9NTN5
Organism   Alteromonas mediterranea strain CP48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4240842..4252356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BM524_RS18105 (BM524_18040) ilvA 4241144..4242691 (-) 1548 WP_071960276.1 threonine ammonia-lyase, biosynthetic -
  BM524_RS18110 (BM524_18045) ilvD 4242691..4244541 (-) 1851 WP_071960277.1 dihydroxy-acid dehydratase -
  BM524_RS18115 (BM524_18050) - 4244970..4245587 (+) 618 WP_071960278.1 trimeric intracellular cation channel family protein -
  BM524_RS18120 (BM524_18055) comM 4245842..4247356 (+) 1515 WP_071960279.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BM524_RS18125 (BM524_18060) ilvY 4247376..4248248 (-) 873 WP_071960280.1 HTH-type transcriptional activator IlvY -
  BM524_RS18130 (BM524_18065) ilvC 4248406..4249884 (+) 1479 WP_071960501.1 ketol-acid reductoisomerase -
  BM524_RS18135 (BM524_18070) - 4250033..4251283 (-) 1251 WP_196772453.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54174.65 Da        Isoelectric Point: 5.5705

>NTDB_id=205098 BM524_RS18120 WP_071960279.1 4245842..4247356(+) (comM) [Alteromonas mediterranea strain CP48]
MGMAVVKTFAGQGVTAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDTSLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRFPAFDL
LSVYEHLTGNKELAKGQPFASHSPNKAQTGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGETLHAERFLTRHLRSPHHTSSAIALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERGNRPD
DSLHDMRERVIAARQKQESRQGKPNGALHAGELADICLLDDADLLFLQAAAKQLNLSMRVFHRTLKVARTIADLEEENAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=205098 BM524_RS18120 WP_071960279.1 4245842..4247356(+) (comM) [Alteromonas mediterranea strain CP48]
ATGGGCATGGCTGTGGTTAAAACTTTTGCAGGCCAAGGCGTTACTGCGCCAGAGGTGAGTGTAGAAATTCATTTGGCTAA
CGGCTTACCCGCCTTTCAACTAGTGGGCATGGCTGAAACCAGTGTAAAGGAAGCCCGTGAGCGTGTGCGCAGCGCCCTTA
TCAACAGTGGCTTTGAATTTCCCGCCAAACGAATAACCGTTAACTTAGCTCCTGCTGATATTCCTAAGTTCGGCGGGCGA
TTCGACCTTCCCATCGCCGTAGGTATACTCGCCGCTTCCGGCTATATTTCAGATACAAGCTTATTAAATATTGCCTTTGT
GGGCGAGCTTGCTTTAAACGGAGAAATAAAGCCGGTTAACGGCCTTATTCCCGTCGTAATGACAGCCGCAAACGAAGATA
TTGCTTTGGTTTACCCTGGTGACAATGACGTTGAAGCCGCACTCGTATCCCACGCTACGCGCTTTCCCGCGTTTGATTTA
CTGTCTGTTTATGAACACCTTACTGGTAATAAGGAATTGGCAAAGGGGCAGCCTTTTGCTTCACATTCGCCTAATAAGGC
GCAAACAGGTTGGGATGATATTATCGGGCAGGAACAGGCTAAACGGGCGTTAATCATTGCCGCAAGTGGTGCGCATAATC
TACTAATGGTGGGGCCTCCCGGCACGGGAAAGAGCCTGCTAGCTAGCCGTATGCTCTCGCTACTACCAGATATGAGCGAA
GAAGAGGCCCTTGAAGTAGCCGCCATTCATTCGGTAAAAGGTGAAACCTTACACGCCGAGCGCTTTTTAACGCGTCATTT
GCGCTCCCCCCATCACACAAGTTCTGCGATAGCGCTCACTGGCGGTGGTTCTAACCCGGTGCCGGGAGAAATTTCACTGG
CCCACAACGGCATCCTATTTTTAGACGAACTCCCCGAATTTGGCCGAAAAGCGCTGGATGTATTGCGCGAACCGCTTGAA
ACCGGCGACGTGCATTTATCACGTGCATCAGGAAGTGCAACCTACCCCGCAAATTTTCAACTCGTAGCCGCCATGAACCC
AAGCCCTACTGGGGATATTGACGACAACCGTCTAACACCTCAACAGCAGCTTAACTACTTAAACCGTTTGTCTGGCCCGC
TGCTAGATAGAATAGATATACAAGTCGAGGTGCCTAGACTACCAGACTACGACTTGCCAGAGCGGGGCAATAGACCTGAC
GACTCGTTACATGACATGCGGGAAAGGGTGATAGCTGCACGGCAAAAACAAGAGTCTCGACAAGGCAAACCCAATGGCGC
TTTACACGCGGGTGAACTTGCCGACATCTGTTTGCTAGATGACGCAGATCTCCTCTTTTTACAGGCAGCTGCGAAACAAC
TTAATTTATCTATGCGCGTATTTCACCGCACGCTAAAAGTGGCTAGAACCATTGCCGACCTTGAAGAAGAAAACGCCGTA
TCAAGGGCTCATATCGCGGAAGCGCTGGGCTATCGAGCTCTCGATAACCTTATAAAGCAGCTCAGTGCTAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.059

100

0.542
  comM Vibrio campbellii strain DS40M4

53.529

100

0.542
  comM Haemophilus influenzae Rd KW20

51.181

100

0.516
  comM Glaesserella parasuis strain SC1401

51.186

100

0.514
  comM Legionella pneumophila str. Paris

45.766

98.413

0.45
  comM Legionella pneumophila strain ERS1305867

45.766

98.413

0.45
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.292

100

0.425

Multiple sequence alignment