Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WM95_RS24870 Genome accession   NZ_CP017990
Coordinates   4983906..4985426 (+) Length   506 a.a.
NCBI ID   WP_063408185.1    Uniprot ID   A0A1Z3N1Z7
Organism   Enterobacter cloacae complex sp. ECNIH7     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4978906..4990426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM95_RS24850 (WM95_24130) ilvE 4980472..4981401 (-) 930 WP_023309654.1 branched-chain-amino-acid transaminase -
  WM95_RS24855 (WM95_24135) ilvM 4981420..4981683 (-) 264 WP_023309655.1 acetolactate synthase 2 small subunit -
  WM95_RS24860 (WM95_24140) ilvG 4981680..4983326 (-) 1647 WP_063408184.1 acetolactate synthase 2 catalytic subunit -
  WM95_RS27555 ilvX 4983329..4983379 (-) 51 WP_166792073.1 peptide IlvX -
  WM95_RS24865 ilvL 4983466..4983564 (-) 99 WP_001311244.1 ilv operon leader peptide -
  WM95_RS24870 (WM95_24145) comM 4983906..4985426 (+) 1521 WP_063408185.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WM95_RS24875 (WM95_24150) - 4985458..4985796 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  WM95_RS24880 (WM95_24155) hdfR 4985915..4986736 (+) 822 WP_063408186.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54969.88 Da        Isoelectric Point: 6.8203

>NTDB_id=204884 WM95_RS24870 WP_063408185.1 4983906..4985426(+) (comM) [Enterobacter cloacae complex sp. ECNIH7]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDVITDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSASLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQTGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNSEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=204884 WM95_RS24870 WP_063408185.1 4983906..4985426(+) (comM) [Enterobacter cloacae complex sp. ECNIH7]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTAAAGGCACCGCTTATTTCCGTCGAGGTTCATTTGAGCAA
TGGGCTACCCGGACTCACTCTTGTCGGGTTACCTGAAACGACGGTTAAAGAGGCCAGAGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTTGCCCCCGCCGATCTGCCTAAAGAGGGGGGACGA
TACGATTTACCTATCGCCATTGCCCTTCTCGCGGCTTCTGAGCAGCTTAATACGACACGGCTAGGCTCGTATGAGTTCGT
TGGCGAACTCGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGTGCGATATCAGGAGCGCTGGAGGCCATACGTGCCGGGC
GGCAAATCATTGTCGCAAATGAAAACGCATCAGAAGTGAGTCTTATCGCCGAGAAAGGATGCCTCATCGCGGGACATTTA
CAGGAAGTTTGTGCCTGGCTGGAAGGACGACATGAACTGTCCGAGCCGGAGGAGTGTGACGATGTTATAACCGACGTCCC
GGAGGATCTCAGCGAGATTATGGGGCAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGGCACAATCTTC
TGTTGATTGGTCCACCTGGTACGGGGAAAACGATGCTGGCGAGCAGGTTGAGTGGATTGCTTCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGCGCTGCCATATATAGCCTCATCAGTTCTGCATCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGCGGGTCTATCCCCGGGCCGGGAGAGATCTCTCTGGCCC
ATAATGGAATTCTATTTCTCGATGAGCTGCCCGAGTTTGAGCGCCGCGTGCTGGATGCACTGAGAGAACCTATTGAATCT
GGCGAAATACATATCTCGCGCACGCGGGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCGGCGATGAATCCCAG
CCCGACGGGCCACTACCAGGGCAACCATAACCGCTGTACGCCGGAGCAAACGTTGCGCTATCTGGGTAAGTTATCCGGCC
CGTTCCTTGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCTCCGCCGGGTCTGCTCAGGCAGACGGGTATCACGGGT
GAAAGCTCAGCTGATGTACGCGAGCGGGTGATTGCGGCCCAGACGCGACAGTATGCTCGTCAGAACAGGCTAAATGCCCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCCCTTAACAGTGAGGATGCGGGATGGCTGGAGGAAACGTTGACCCGCT
TTGGGCTGTCTATACGTGCGTGGCAGCGTTTGCTAAAAGTGGCCAGAACCATTGCTGACGTGGAGGGGTGCACTGACATT
GAGAGAAAGCATTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3N1Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio cholerae strain A1552

58.566

99.209

0.581
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441

Multiple sequence alignment