Detailed information NTG0204313

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: BMF34_RS00950
• Genome accession: NZ_CP017952
• Coordinates: 146461..146910 (+)
• Length: 149 a.a.
• NCBI ID: WP_119773875.1
• Uniprot ID: -
• Organism: Streptococcus iniae strain 89353
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 141461..151910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BMF34_RS00920 (BMF34_00910)	-	143187..143552 (+)	366	WP_003098799.1	DUF1033 family protein	-
BMF34_RS00925 (BMF34_00915)	comYA	143613..144554 (+)	942	WP_003098801.1	competence type IV pilus ATPase ComGA	Machinery gene
BMF34_RS00930 (BMF34_00920)	comYB	144505..145521 (+)	1017	WP_003098804.1	competence type IV pilus assembly protein ComGB	Machinery gene
BMF34_RS00935 (BMF34_00925)	comGC/cglC	145522..145848 (+)	327	WP_003098806.1	competence type IV pilus major pilin ComGC	Machinery gene
BMF34_RS10575 (BMF34_00930)	comGD	145808..146236 (+)	429	WP_003098807.1	competence type IV pilus minor pilin ComGD	-
BMF34_RS00945 (BMF34_00935)	comGE	146208..146501 (+)	294	WP_031239176.1	competence type IV pilus minor pilin ComGE	-
BMF34_RS00950 (BMF34_00940)	comYF	146461..146910 (+)	450	WP_119773875.1	competence type IV pilus minor pilin ComGF	Machinery gene
BMF34_RS00955 (BMF34_00945)	comGG	146900..147253 (+)	354	WP_003098812.1	competence type IV pilus minor pilin ComGG	-
BMF34_RS00960 (BMF34_00950)	comYH	147315..148271 (+)	957	WP_003098815.1	class I SAM-dependent methyltransferase	Machinery gene
BMF34_RS00965 (BMF34_00955)	-	148328..149524 (+)	1197	WP_003098816.1	acetate kinase	-
BMF34_RS00970 (BMF34_00960)	-	149647..149850 (+)	204	WP_003098819.1	helix-turn-helix transcriptional regulator	-
BMF34_RS00975 (BMF34_00965)	-	149863..150315 (+)	453	WP_003098820.1	hypothetical protein	-
BMF34_RS00980 (BMF34_00970)	-	150325..150981 (+)	657	WP_003098822.1	CPBP family intramembrane glutamic endopeptidase	-
BMF34_RS00985 (BMF34_00975)	proC	151015..151785 (-)	771	WP_003098824.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16976.98 Da
• Isoelectric Point: 10.2834

>NTDB_id=204313 BMF34_RS00950 WP_119773875.1 146461..146910(+) (comYF) [Streptococcus iniae strain 89353]
MKSIKKSLALRKISLKAFTLLECMLALVILSGAILVYQGMTKSLFFNMSYLVENDQDKWLLFSQQLRAELTGARFEKVEN
NKLYVAKEGKQIAFGLSKQGDFRKTAANGHGYHPMLLDLKDAKISHHNKEITVSITWKSGLERVFLYAF

Nucleotide

• Length: 450 bp

>NTDB_id=204313 BMF34_RS00950 WP_119773875.1 146461..146910(+) (comYF) [Streptococcus iniae strain 89353]
GTGAAAAGCATCAAAAAGTCTTTAGCCTTAAGAAAAATTAGCCTCAAGGCATTTACGCTTTTAGAGTGTATGTTGGCCTT
AGTGATATTGTCAGGTGCCATCTTAGTTTATCAAGGAATGACAAAATCTTTATTTTTTAACATGTCTTATTTGGTTGAAA
ATGATCAGGACAAGTGGTTGTTGTTTTCACAACAGTTGAGAGCTGAGTTAACAGGAGCTCGGTTTGAGAAGGTCGAAAAT
AATAAACTTTACGTAGCAAAAGAAGGAAAGCAGATAGCTTTTGGACTTTCAAAACAAGGAGATTTTCGAAAAACAGCAGC
AAATGGTCATGGTTATCATCCCATGCTTCTGGATCTTAAAGATGCTAAGATTAGTCATCATAATAAGGAGATTACAGTAA
GTATCACTTGGAAAAGTGGGCTAGAAAGAGTCTTTCTTTATGCTTTTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (53-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	52.174	92.617	0.483
comYF	Streptococcus mutans UA159	51.449	92.617	0.477
comGF/cglF	Streptococcus pneumoniae D39	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae Rx1	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae R6	46.617	89.262	0.416
comGF/cglF	Streptococcus pneumoniae TIGR4	46.617	89.262	0.416
comGF/cglF	Streptococcus mitis NCTC 12261	45.865	89.262	0.409
comGF	Lactococcus lactis subsp. cremoris KW2	43.478	92.617	0.403
comGF/cglF	Streptococcus mitis SK321	44.361	89.262	0.396