Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | BMF34_RS00960 | Genome accession | NZ_CP017952 |
| Coordinates | 147315..148271 (+) | Length | 318 a.a. |
| NCBI ID | WP_003098815.1 | Uniprot ID | - |
| Organism | Streptococcus iniae strain 89353 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 142315..153271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMF34_RS00920 (BMF34_00910) | - | 143187..143552 (+) | 366 | WP_003098799.1 | DUF1033 family protein | - |
| BMF34_RS00925 (BMF34_00915) | comYA | 143613..144554 (+) | 942 | WP_003098801.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| BMF34_RS00930 (BMF34_00920) | comYB | 144505..145521 (+) | 1017 | WP_003098804.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| BMF34_RS00935 (BMF34_00925) | comGC/cglC | 145522..145848 (+) | 327 | WP_003098806.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BMF34_RS10575 (BMF34_00930) | comGD | 145808..146236 (+) | 429 | WP_003098807.1 | competence type IV pilus minor pilin ComGD | - |
| BMF34_RS00945 (BMF34_00935) | comGE | 146208..146501 (+) | 294 | WP_031239176.1 | competence type IV pilus minor pilin ComGE | - |
| BMF34_RS00950 (BMF34_00940) | comYF | 146461..146910 (+) | 450 | WP_119773875.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| BMF34_RS00955 (BMF34_00945) | comGG | 146900..147253 (+) | 354 | WP_003098812.1 | competence type IV pilus minor pilin ComGG | - |
| BMF34_RS00960 (BMF34_00950) | comYH | 147315..148271 (+) | 957 | WP_003098815.1 | class I SAM-dependent methyltransferase | Machinery gene |
| BMF34_RS00965 (BMF34_00955) | - | 148328..149524 (+) | 1197 | WP_003098816.1 | acetate kinase | - |
| BMF34_RS00970 (BMF34_00960) | - | 149647..149850 (+) | 204 | WP_003098819.1 | helix-turn-helix transcriptional regulator | - |
| BMF34_RS00975 (BMF34_00965) | - | 149863..150315 (+) | 453 | WP_003098820.1 | hypothetical protein | - |
| BMF34_RS00980 (BMF34_00970) | - | 150325..150981 (+) | 657 | WP_003098822.1 | CPBP family intramembrane glutamic endopeptidase | - |
| BMF34_RS00985 (BMF34_00975) | proC | 151015..151785 (-) | 771 | WP_003098824.1 | pyrroline-5-carboxylate reductase | - |
| BMF34_RS00990 (BMF34_00980) | pepA | 151809..152876 (-) | 1068 | WP_003098826.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35968.86 Da Isoelectric Point: 4.5568
>NTDB_id=204314 BMF34_RS00960 WP_003098815.1 147315..148271(+) (comYH) [Streptococcus iniae strain 89353]
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
MNFENIEKAFELILENSQLIENELKTHIYDALIEQNSFYLGAEGASEQVAKNNEVLRSLNLSKEEWRRAFQFIFIKVGQT
EKLQANHQFTPDSLGFLILFLIETLTQEDSLDILEIGSGTGNLAQTLLNNSGKQLDYLGIEVDDLLIDLSASIAEIMNST
ARFVQEDAVRPQILKESHIIISDLPVGYYPNDEIASRYQVASPDGHTYAHHLLMEQALKYLKQDGFAIFLAPASLLQSQQ
SHLLKEWLKGYAQLSAVITLPETFFGDPSVAKSLIVLQKQSDKKGETFVYPLTDLQSADKVRLFMENFKKWKADNVFS
Nucleotide
Download Length: 957 bp
>NTDB_id=204314 BMF34_RS00960 WP_003098815.1 147315..148271(+) (comYH) [Streptococcus iniae strain 89353]
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
ATGAATTTTGAAAATATTGAGAAAGCTTTTGAGCTTATTTTAGAAAATAGTCAACTTATTGAAAATGAGTTGAAAACGCA
CATTTATGATGCCCTTATTGAGCAGAATTCTTTTTATTTGGGAGCTGAAGGTGCTAGTGAGCAGGTCGCTAAAAACAATG
AAGTTTTAAGGTCACTCAATTTAAGTAAAGAAGAGTGGCGTCGCGCTTTTCAGTTTATTTTTATCAAGGTTGGTCAAACA
GAAAAACTGCAGGCGAATCACCAATTTACACCAGATAGTCTAGGTTTCCTTATTTTATTTTTAATTGAAACCTTGACACA
AGAAGACTCTCTTGACATTTTAGAGATTGGCAGTGGGACAGGTAATCTAGCACAAACACTTTTGAATAATAGTGGTAAAC
AATTAGATTACTTAGGTATTGAAGTGGACGATTTACTCATTGATTTATCAGCTAGTATAGCTGAGATAATGAATTCGACA
GCACGTTTTGTTCAAGAAGATGCCGTTAGACCACAAATTTTGAAAGAAAGTCATATTATTATCAGTGATTTACCAGTAGG
TTATTATCCTAATGATGAGATTGCTAGTCGTTATCAGGTTGCAAGTCCAGATGGTCATACCTATGCCCATCACTTATTGA
TGGAACAGGCTTTGAAATATTTAAAACAAGATGGCTTTGCAATTTTCTTAGCACCAGCCAGTCTTTTGCAAAGTCAACAA
AGCCATCTCCTTAAAGAGTGGTTAAAAGGTTATGCTCAGTTATCTGCAGTGATTACCTTGCCAGAAACATTCTTTGGAGA
TCCATCCGTGGCTAAATCACTGATTGTTCTGCAAAAGCAGAGTGACAAAAAAGGAGAAACCTTTGTTTATCCATTGACTG
ATTTACAGTCTGCAGATAAGGTTCGTCTCTTCATGGAGAACTTCAAAAAATGGAAAGCTGATAATGTCTTTTCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
67.192 |
99.686 |
0.67 |
| comYH | Streptococcus mutans UA140 |
66.877 |
99.686 |
0.667 |