Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | K08M4_RS01265 | Genome accession | NZ_CP017916 |
| Coordinates | 272215..272844 (+) | Length | 209 a.a. |
| NCBI ID | WP_086048619.1 | Uniprot ID | A0AA34XMD2 |
| Organism | Vibrio syngnathi strain K08M4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 267215..277844
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K08M4_RS01250 (K08M4_02420) | - | 267889..270447 (-) | 2559 | WP_198299303.1 | PBP1A family penicillin-binding protein | - |
| K08M4_RS01255 (K08M4_02430) | pilM | 270599..271624 (+) | 1026 | WP_086048617.1 | type IV pilus assembly protein PilM | Machinery gene |
| K08M4_RS01260 (K08M4_02440) | pilN | 271608..272222 (+) | 615 | WP_086048618.1 | PilN domain-containing protein | Machinery gene |
| K08M4_RS01265 (K08M4_02450) | pilO | 272215..272844 (+) | 630 | WP_086048619.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| K08M4_RS01270 (K08M4_02460) | pilP | 272831..273349 (+) | 519 | WP_086048620.1 | pilus assembly protein PilP | Machinery gene |
| K08M4_RS01275 (K08M4_02470) | pilQ | 273385..275103 (+) | 1719 | WP_086048621.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| K08M4_RS01280 (K08M4_02480) | aroK | 275280..275798 (+) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| K08M4_RS01285 (K08M4_02490) | aroB | 275823..276911 (+) | 1089 | WP_086048622.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24347.88 Da Isoelectric Point: 4.5072
>NTDB_id=204040 K08M4_RS01265 WP_086048619.1 272215..272844(+) (pilO) [Vibrio syngnathi strain K08M4]
MANLQNRISWQNRISWQDLDADEITEWPLLPQLLVILLLMVLIQGVGTWLYVLPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNALTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKPEVDDEIQ
MANLQNRISWQNRISWQDLDADEITEWPLLPQLLVILLLMVLIQGVGTWLYVLPLDDELQQMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNALTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKPEVDDEIQ
Nucleotide
Download Length: 630 bp
>NTDB_id=204040 K08M4_RS01265 WP_086048619.1 272215..272844(+) (pilO) [Vibrio syngnathi strain K08M4]
ATGGCTAACCTTCAAAATCGGATTAGTTGGCAAAATAGGATTAGCTGGCAAGATCTCGATGCTGATGAGATCACCGAATG
GCCGCTGTTGCCCCAGCTGCTCGTGATTCTGTTGTTGATGGTATTGATCCAAGGTGTTGGGACTTGGCTGTATGTGCTGC
CTTTAGATGATGAACTGCAGCAGATGAAGCAGCAAGAGCAGACCTTGAAAGCCACCTTGAGAATAAAGGCCAATAAGGTT
GCGGCCTTACCTAAGCTTCAGAGTCAGTTGGATGAGCTAACCAGTCGCTATGACTATCTGTTAGAGCAGCTGCCGGTTCA
AAAGGAACTTGCCAGTATGTTGGCCTCAGTGAATGAACTTGGTTTGGATAATGCGCTGACCTTCACGCGCATTGATTGGG
GGCAAAAGCAGAACAAAGAATTCCTCTATCGGTTGCCTCTCAATATTGAGCTAACCGGCGACTACCATGAGATTGGCGAT
TTCTCAGCAGCCATCGCAAAGCTGCCACGTATTATTAGCTTTGATGACGTGAACTGGCAGCGAGTTAGCCAAGAAAGCAG
CACGTTGCACTTTCGAGTTCGCGCTTATACCTACCAGTTTAAACCGGAGGTAGATGATGAAATCCAATAG
ATGGCTAACCTTCAAAATCGGATTAGTTGGCAAAATAGGATTAGCTGGCAAGATCTCGATGCTGATGAGATCACCGAATG
GCCGCTGTTGCCCCAGCTGCTCGTGATTCTGTTGTTGATGGTATTGATCCAAGGTGTTGGGACTTGGCTGTATGTGCTGC
CTTTAGATGATGAACTGCAGCAGATGAAGCAGCAAGAGCAGACCTTGAAAGCCACCTTGAGAATAAAGGCCAATAAGGTT
GCGGCCTTACCTAAGCTTCAGAGTCAGTTGGATGAGCTAACCAGTCGCTATGACTATCTGTTAGAGCAGCTGCCGGTTCA
AAAGGAACTTGCCAGTATGTTGGCCTCAGTGAATGAACTTGGTTTGGATAATGCGCTGACCTTCACGCGCATTGATTGGG
GGCAAAAGCAGAACAAAGAATTCCTCTATCGGTTGCCTCTCAATATTGAGCTAACCGGCGACTACCATGAGATTGGCGAT
TTCTCAGCAGCCATCGCAAAGCTGCCACGTATTATTAGCTTTGATGACGTGAACTGGCAGCGAGTTAGCCAAGAAAGCAG
CACGTTGCACTTTCGAGTTCGCGCTTATACCTACCAGTTTAAACCGGAGGTAGATGATGAAATCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
77.202 |
92.344 |
0.713 |
| pilO | Vibrio campbellii strain DS40M4 |
73.016 |
90.431 |
0.66 |