Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K08M4_RS01260 Genome accession   NZ_CP017916
Coordinates   271608..272222 (+) Length   204 a.a.
NCBI ID   WP_086048618.1    Uniprot ID   A0AA34TLD4
Organism   Vibrio syngnathi strain K08M4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266608..277222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS22445 - 266699..266878 (-) 180 WP_017099997.1 hypothetical protein -
  K08M4_RS01245 (K08M4_02410) oxyR 266877..267770 (+) 894 WP_086048615.1 DNA-binding transcriptional regulator OxyR -
  K08M4_RS01250 (K08M4_02420) - 267889..270447 (-) 2559 WP_198299303.1 PBP1A family penicillin-binding protein -
  K08M4_RS01255 (K08M4_02430) pilM 270599..271624 (+) 1026 WP_086048617.1 type IV pilus assembly protein PilM Machinery gene
  K08M4_RS01260 (K08M4_02440) pilN 271608..272222 (+) 615 WP_086048618.1 PilN domain-containing protein Machinery gene
  K08M4_RS01265 (K08M4_02450) pilO 272215..272844 (+) 630 WP_086048619.1 type 4a pilus biogenesis protein PilO Machinery gene
  K08M4_RS01270 (K08M4_02460) pilP 272831..273349 (+) 519 WP_086048620.1 pilus assembly protein PilP Machinery gene
  K08M4_RS01275 (K08M4_02470) pilQ 273385..275103 (+) 1719 WP_086048621.1 type IV pilus secretin PilQ family protein Machinery gene
  K08M4_RS01280 (K08M4_02480) aroK 275280..275798 (+) 519 WP_009848907.1 shikimate kinase AroK -
  K08M4_RS01285 (K08M4_02490) aroB 275823..276911 (+) 1089 WP_086048622.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23387.82 Da        Isoelectric Point: 9.6393

>NTDB_id=204039 K08M4_RS01260 WP_086048618.1 271608..272222(+) (pilN) [Vibrio syngnathi strain K08M4]
MLHQINLLPWRDEIRVQHKKRFIHIIVLGGLLALAGQWAVGNYFHDQQDKQQARLTYLKQYIAQLDRQIQSLKVAEQEHK
AILTRLNVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSESLKSVEMHSII
HNRKRFNKEFQTFKVSFVFSPVSLDNATAESTTANTKDKGANHG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=204039 K08M4_RS01260 WP_086048618.1 271608..272222(+) (pilN) [Vibrio syngnathi strain K08M4]
ATGTTGCATCAAATTAACCTACTGCCTTGGCGCGATGAGATTCGAGTTCAGCATAAGAAGCGTTTTATCCACATTATCGT
CCTCGGAGGTCTTCTTGCGCTTGCAGGGCAATGGGCGGTGGGTAACTATTTCCACGATCAGCAAGACAAGCAGCAAGCTC
GCCTTACTTACTTAAAGCAATACATTGCGCAGCTCGACCGGCAAATTCAGTCGTTGAAAGTCGCGGAGCAAGAACATAAG
GCGATTCTGACTCGACTCAACGTTGTGGAGTCTTTACAGCTTGGTCGTAACAAGACCACCGACTTTATGAACCTGATGCC
AGAGCTGATTCCTGAGGGAGTCTATGTCGACAAGATAAAGATGAATGGTCAGGAAATTGAAATGTCGGGCATCAGCGACA
GTACCGCTCGTCTCGCCACTATGTTGGATAATTTGGAGCGCTCCGAGTCACTTAAAAGTGTCGAGATGCACTCTATTATC
CATAACCGCAAGCGCTTCAATAAAGAGTTTCAGACCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGACAACGC
AACCGCAGAGAGCACGACCGCGAACACAAAAGATAAGGGGGCGAATCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

63.102

91.667

0.578
  pilN Vibrio cholerae strain A1552

63.587

90.196

0.574

Multiple sequence alignment