Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K08M3_RS16365 Genome accession   NZ_CP017913
Coordinates   3435217..3436740 (-) Length   507 a.a.
NCBI ID   WP_086047110.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain K08M3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3430217..3441740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M3_RS16345 (K08M3_31960) - 3431504..3432490 (+) 987 WP_031777274.1 serine/threonine protein kinase -
  K08M3_RS16350 (K08M3_31970) - 3432525..3433127 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  K08M3_RS16355 (K08M3_31980) - 3433174..3434052 (-) 879 WP_086047109.1 acyltransferase -
  K08M3_RS16360 (K08M3_31990) - 3434202..3435158 (+) 957 WP_054729808.1 DUF2860 domain-containing protein -
  K08M3_RS16365 (K08M3_32000) comM 3435217..3436740 (-) 1524 WP_086047110.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K08M3_RS16370 (K08M3_32010) ilvG 3437205..3438851 (+) 1647 WP_005378960.1 acetolactate synthase 2 catalytic subunit -
  K08M3_RS16375 (K08M3_32020) ilvM 3438863..3439147 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  K08M3_RS16380 (K08M3_32030) ilvE 3439160..3440098 (+) 939 WP_005378953.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55019.15 Da        Isoelectric Point: 9.0584

>NTDB_id=204027 K08M3_RS16365 WP_086047110.1 3435217..3436740(-) (comM) [Vibrio alginolyticus strain K08M3]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKTIEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKARVSHARNNMLNRSGKVNALLGSREIEAFCPLHKIDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=204027 K08M3_RS16365 WP_086047110.1 3435217..3436740(-) (comM) [Vibrio alginolyticus strain K08M3]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATCAGCAA
CGGCATGCCAGGGTTTACCTTAGTAGGCTTGCCAGAGACAACGGTAAAAGAGTCCAAAGATCGCGTACGCAGTGCGATCA
TTAATTCTAACTTTCAATTTCCTGCTAAGCGGATCACCGTGAACTTGGCTCCGGCAGATCTACCCAAGGAGGGAGGACGT
TTTGATCTTCCTATTGCATTGGGAATTTTGGCCGCTTCGGATCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTGGCGCTATCTGGTGGTCTAAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTGAATGGCGATCAGGCGGCGCTAGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATCGACTGAATCTTTTTCAAACGCCTAAGCGAAAAACGATCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGAGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACGATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTACCCAGACCAGGGGAGATCTCTTTAG
CCCACAACGGGTTATTGTTTCTCGATGAAATGCCCGAATTTGATCGTAAAGTTCTAGACTCGTTACGCGAACCGCTCGAA
TCTGGCGAGATCATTATCTCTCGAGCGCAAGGTAAAACACGCTTTCCGGCTCGCTTCCAATTAGTTGGAGCATTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCGCGCACCAATCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACTGCTATCGTAAAAGCGCGTGTGAGCCATGCGCGTAACAATATGCTAAACCGCAGTGGTAAGGTCAATGC
ACTGCTAGGTAGTCGAGAAATTGAGGCGTTTTGTCCCTTGCATAAGATTGATGCTGAGTTTCTTGAAACCGCTTTGCATC
GTTTAGGACTCTCTATTCGTGCATATCATCGTATTATCAAAGTGGCGCGAACAATCGCCGATCTGGATGGGGCGGAGCAA
ATTGAACGAACGCACTTGGCCGAGGCACTTGGGTATCGAGCGATGGACCGTTTACTGAAACAGCTTACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.083

100

0.941
  comM Vibrio cholerae strain A1552

85.207

100

0.852
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

99.803

0.434

Multiple sequence alignment