Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SPG_1509 Genome accession   CP001015
Coordinates   1452906..1453694 (-) Length   262 a.a.
NCBI ID   ACF55703.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1447906..1458694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1503 - 1448893..1449405 (-) 513 ACF56699.1 adenine phosphoribosyltransferase -
  SPG_1504 - 1449492..1450250 (-) 759 ACF55529.1 conserved hypothetical protein -
  SPG_1505 - 1450751..1451881 (-) 1131 ACF55953.1 ABC transporter, ATP-binding protein -
  SPG_1506 - 1451982..1452104 (+) 123 ACF56425.1 conserved hypothetical protein -
  SPG_1508 - 1452331..1452906 (-) 576 ACF55292.1 isochorismatase family protein -
  SPG_1509 codY 1452906..1453694 (-) 789 ACF55703.1 GTP-sensing transcriptional pleiotropic repressor CodY Regulator
  SPG_1510 - 1453958..1455532 (-) 1575 ACF54968.1 ATP-dependent RNA helicase, putative -
  SPG_1511 - 1455731..1456957 (-) 1227 ACF55446.1 oxalate:formate antiporter -
  SPG_1512 - 1457150..1458466 (+) 1317 ACF55007.1 Pyridine nucleotide-disulphide oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29759.95 Da        Isoelectric Point: 6.1475

>NTDB_id=20377 SPG_1509 ACF55703.1 1452906..1453694(-) (codY) [Streptococcus pneumoniae G54]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIHCNACIINSKGRLLGYFMRYKTNTXRVEQFFQTKIFPDDYV
QGANMIYETEANLPVEHDMSIFPVESRDDFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLVLVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGKLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=20377 SPG_1509 ACF55703.1 1452906..1453694(-) (codY) [Streptococcus pneumoniae G54]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACATCAATTTTGAAACGCTCAGAGGAGCAGTTGCAGGATGAGCTCCC
TTACAACGCTATTACGCGTCAGTTAGCGGATATTATTCATTGCAATGCCTGCATTATCAATAGTAAGGGACGTCTGCTTG
GCTATTTTATGCGTTATAAAACAAATACAGANCGCGTAGAGCAATTCTTCCAAACTAAGATTTTCCCAGATGACTACGTT
CAAGGGGCTAATATGATTTACGAAACAGAAGCAAACTTGCCTGTTGAGCATGATATGAGTATTTTCCCTGTTGAGAGTAG
AGATGATTTTCCAGATGGCTTGACGACTATTGCACCGATTCATGTATCGGGGATTCGCCTTGGTTCTTTGATTATTTGGC
GTAATGATAAAAAATTCGAAGATGAGGACTTGGTTCTTGTTGAGATTGCCAGTACCGTTGTTGGGATTCAGCTTCTTAAC
TTCCAACGTGAAGAAGATGAGAAAAATATTCGTCGTCGTACTGCTGTCACCATGGCGGTCAATACCCTTTCTTACTCCGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGAAGTTGACTGCGTCAGTGATTGCAGATCGTA
TCGGAATCACTCGCTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGGATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTATCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45

Multiple sequence alignment