Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HI_0250 Genome accession   L42023
Coordinates   282424..282930 (+) Length   168 a.a.
NCBI ID   AAC21916.1    Uniprot ID   -
Organism   Haemophilus influenzae Rd KW20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 277424..287930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HI_0249 - 279439..282270 (-) 2832 AAC21915.1 excinuclease ABC, subunit A (uvrA) -
  HI_0250 ssb 282424..282930 (+) 507 AAC21916.1 single-stranded DNA binding protein (ssb) Machinery gene
  HI_0251 - 283108..283920 (-) 813 AAC21917.1 tonB protein -
  HI_0252 - 283930..284373 (-) 444 AAC21918.1 biopolymer transport protein (exbD) -
  HI_0253 - 284377..284829 (-) 453 AAC21919.1 biopolymer transport protein (exbB) -
  HI_0254 - 284998..285465 (-) 468 AAC21920.1 bacterioferritin comigratory protein (bcp) -
  HI_0255 - 285566..286462 (+) 897 AAC21921.1 dihydrodipicolinate synthetase (dapA) -
  HI_0256 - 286573..287220 (+) 648 AAC21922.1 lipoprotein, putative -
  HI_0257 - 287390..287713 (+) 324 AAC21923.1 sigma(54) modulation protein, putative -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18753.55 Da        Isoelectric Point: 5.2649

>NTDB_id=20377 HI_0250 AAC21916.1 282424..282930(+) (ssb) [Haemophilus influenzae Rd KW20]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGAPQSSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMD
GFDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=20377 HI_0250 AAC21916.1 282424..282930(+) (ssb) [Haemophilus influenzae Rd KW20]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACTGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTCTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGCTCTCAAGTGTATGTGGAGGGG
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGATATGGGCGGTGCGCCACAATCTTCTTACCAAGCTCGTC
AAACTAACAATGGTAATAGTTATCAATCATCTCGCCCAGCTCCACAACAAGCTGCACCACAGGCTGAGCCACCAATGGAT
GGATTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

67.778

100

0.726
  ssb Vibrio cholerae strain A1552

54.945

100

0.595
  ssb Neisseria meningitidis MC58

51.445

100

0.53
  ssb Neisseria gonorrhoeae MS11

51.445

100

0.53
  ssb Latilactobacillus sakei subsp. sakei 23K

34.831

100

0.369

Multiple sequence alignment