Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BLL42_RS15080 Genome accession   NZ_CP017886
Coordinates   3146849..3148342 (-) Length   497 a.a.
NCBI ID   WP_071552811.1    Uniprot ID   A0A1J0ELD2
Organism   Pseudomonas frederiksbergensis strain ERDD5:01     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3141849..3153342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLL42_RS15065 (BLL42_14760) - 3143001..3144398 (-) 1398 WP_071555768.1 NorM family multidrug efflux MATE transporter -
  BLL42_RS15070 (BLL42_14765) - 3144557..3145477 (+) 921 WP_071552809.1 LysR substrate-binding domain-containing protein -
  BLL42_RS15075 (BLL42_14770) - 3145628..3146842 (+) 1215 WP_071552810.1 aldose 1-epimerase family protein -
  BLL42_RS15080 (BLL42_14775) comM 3146849..3148342 (-) 1494 WP_071552811.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BLL42_RS15085 (BLL42_14780) - 3148628..3148885 (-) 258 WP_071552812.1 accessory factor UbiK family protein -
  BLL42_RS29690 - 3148884..3149108 (+) 225 WP_129586957.1 hypothetical protein -
  BLL42_RS15090 (BLL42_14785) glnK 3149300..3149638 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  BLL42_RS15095 (BLL42_14790) - 3149672..3151009 (+) 1338 WP_071552813.1 ammonium transporter -
  BLL42_RS15100 (BLL42_14795) - 3151223..3151648 (+) 426 WP_071552814.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  BLL42_RS15105 (BLL42_14800) sutA 3151751..3152077 (+) 327 WP_019694242.1 transcriptional regulator SutA -
  BLL42_RS15110 (BLL42_14805) - 3152232..3152939 (-) 708 WP_071552815.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52975.11 Da        Isoelectric Point: 7.8114

>NTDB_id=203574 BLL42_RS15080 WP_071552811.1 3146849..3148342(-) (comM) [Pseudomonas frederiksbergensis strain ERDD5:01]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLYASKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVISRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCCCSPDQIQRYRNKLSGPLLDRIDLHLTVAREATALNPAPKP
GDDTLTAAALVADARERQHKRQGCANAFLDLPGLRRHCTLSTTDETWLETACERLTLSLRAAHRLLKVARTLADLEQVDG
ITREHLAEALQYRPTAN

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=203574 BLL42_RS15080 WP_071552811.1 3146849..3148342(-) (comM) [Pseudomonas frederiksbergensis strain ERDD5:01]
ATGTCTCTGGCCATCGTCCACAGTCGCGCCCAGGTCGGTGTGGAAGCGCCCGCCGTCACCGTAGAAGTCCATCTGGCCAA
TGGCTTGCCGTCGCTGACGATGGTGGGTTTGCCGGAGGCAGCGGTGAAAGAAAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAATTTCCGGCACGGCGTATCACCTTGAATCTCGCCCCAGCCGATTTACCGAAGGACGGTGGGCGA
TTCGATCTGGCGATTGCTCTTGGAATTCTGGCTGCCAGCGTGCAGGTACCGACGCTGACGCTGGATGACGTGGAGTGCCT
GGGAGAGTTGGCGCTGTCAGGCGCGGTGCGGGCGGTTCGTGGTGTATTGCCGGCGGCACTCGCAGCACGCAAGGCCGGAC
GATCGCTAATGGTGCCGCGGGCAAATGCCGAGGAAGCATGCCTGGCGTCAGGATTAAAGGTCATTGCAGTGGATCATCTG
CTGGAGGCGGTCGCGCACTTCAATGGCCACACGCCCGTAGAGCCGTTTGTTTCCAATGGTTTGCTCTACGCCAGCAAACC
TTATCCAGACTTGAATGAAGTACAGGGCCAACTTGCGGCCAAGCGCGCATTGCTGATTGCCGCGGCCGGGGCTCATAACC
TGCTGTTCAGCGGGCCGCCGGGGACGGGGAAAACGCTGCTGGCGAGTCGTTTACCCGGGCTGCTGCCGCCACTGGCCGAG
AGCGAGGCGCTGGAAGTCGCGGCGATTCAATCGGTCACCAGTTGTGTGCCGTTGAGCCATTGGCCTCAACGACCGTTCCG
CCAGCCGCACCATTCGGCGTCCGGCCCGGCACTGGTTGGCGGAGGCTCGAAACCACAGCCCGGTGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTCCTCGATGAGCTGCCGGAGTTTGATCGCAAGGTGCTGGAAGTGCTGAGAGAACCGTTGGAGTCG
GGTTGTATCGTTATATCCCGAGCCCGTGACCGCGTACGTTTTCCCGCGCGCTTTCAACTGGTGGCCGCCATGAACCCGTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGACGCTGCTGTTGTTCTCCAGACCAGATCCAGCGTTATCGCAACAAACTGT
CGGGGCCGCTGCTGGACCGAATTGATCTGCACCTGACGGTTGCCCGCGAAGCCACAGCGTTGAATCCAGCGCCAAAACCC
GGCGATGACACCCTAACCGCCGCAGCCCTGGTCGCGGACGCAAGGGAGCGGCAACACAAACGCCAAGGGTGCGCCAATGC
CTTCCTCGACTTGCCGGGCCTGCGCCGACACTGCACGTTATCCACAACCGACGAAACCTGGCTGGAAACCGCGTGCGAAC
GATTGACCTTGTCGCTGAGGGCCGCGCACCGACTGCTCAAGGTAGCGCGCACCCTGGCGGACCTTGAGCAGGTCGATGGC
ATCACCCGCGAACACCTGGCCGAGGCGCTGCAGTATCGACCGACCGCAAACTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J0ELD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Haemophilus influenzae Rd KW20

53.908

100

0.541
  comM Glaesserella parasuis strain SC1401

53.4

100

0.537
  comM Legionella pneumophila str. Paris

50.202

99.799

0.501
  comM Legionella pneumophila strain ERS1305867

50.202

99.799

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.129

100

0.457

Multiple sequence alignment