Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   BLL42_RS05575 Genome accession   NZ_CP017886
Coordinates   1108951..1109586 (-) Length   211 a.a.
NCBI ID   WP_167368554.1    Uniprot ID   -
Organism   Pseudomonas frederiksbergensis strain ERDD5:01     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1103951..1114586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLL42_RS05540 (BLL42_05410) - 1104458..1104928 (-) 471 WP_071551143.1 (2Fe-2S)-binding protein -
  BLL42_RS05545 (BLL42_05415) murB 1105065..1106084 (-) 1020 WP_071551144.1 UDP-N-acetylmuramate dehydrogenase -
  BLL42_RS05550 (BLL42_05420) - 1106081..1106545 (-) 465 WP_071551145.1 low molecular weight protein-tyrosine-phosphatase -
  BLL42_RS05555 (BLL42_05425) kdsB 1106545..1107309 (-) 765 WP_071551146.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  BLL42_RS05560 (BLL42_05430) - 1107306..1107491 (-) 186 WP_071551147.1 Trm112 family protein -
  BLL42_RS05565 (BLL42_05435) lpxK 1107516..1108526 (-) 1011 WP_071551148.1 tetraacyldisaccharide 4'-kinase -
  BLL42_RS05570 (BLL42_05440) - 1108526..1108954 (-) 429 WP_071551149.1 biopolymer transporter ExbD -
  BLL42_RS05575 (BLL42_05445) exbB 1108951..1109586 (-) 636 WP_167368554.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  BLL42_RS05580 (BLL42_05450) comA 1109697..1111928 (-) 2232 WP_071551150.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BLL42_RS05585 (BLL42_05455) - 1112064..1112579 (+) 516 WP_071551151.1 DUF2062 domain-containing protein -
  BLL42_RS05590 (BLL42_05460) - 1112644..1113423 (-) 780 WP_071551152.1 ABC transporter permease -
  BLL42_RS05595 (BLL42_05465) - 1113420..1114352 (-) 933 WP_071551153.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22999.15 Da        Isoelectric Point: 6.8771

>NTDB_id=203564 BLL42_RS05575 WP_167368554.1 1108951..1109586(-) (exbB) [Pseudomonas frederiksbergensis strain ERDD5:01]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=203564 BLL42_RS05575 WP_167368554.1 1108951..1109586(-) (exbB) [Pseudomonas frederiksbergensis strain ERDD5:01]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGTGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAACAAAGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAGATCCTCGCGGCGGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCCCGGGTGATCCACGAGCTGGAACGCTACAT
CAACGCGCTGGGCACCATCGCCGCCATGGCGCCGTTGCTGGGGCTGCTCGGCACGGTGTTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGCACGGGCATGACCACCAACGCTGCGGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
TCGGGTCTGATTGTCGGTATCCCGTCGGTGTTCTTCCACCGGTTCCTGCAACGACGGATCGATGAACTTGTTGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment