Detailed information NTG0203565

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: BLL42_RS05580
• Genome accession: NZ_CP017886
• Coordinates: 1109697..1111928 (-)
• Length: 743 a.a.
• NCBI ID: WP_071551150.1
• Uniprot ID: A0A1J0EGS8
• Organism: Pseudomonas frederiksbergensis strain ERDD5:01
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1104697..1116928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLL42_RS05545 (BLL42_05415)	murB	1105065..1106084 (-)	1020	WP_071551144.1	UDP-N-acetylmuramate dehydrogenase	-
BLL42_RS05550 (BLL42_05420)	-	1106081..1106545 (-)	465	WP_071551145.1	low molecular weight protein-tyrosine-phosphatase	-
BLL42_RS05555 (BLL42_05425)	kdsB	1106545..1107309 (-)	765	WP_071551146.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
BLL42_RS05560 (BLL42_05430)	-	1107306..1107491 (-)	186	WP_071551147.1	Trm112 family protein	-
BLL42_RS05565 (BLL42_05435)	lpxK	1107516..1108526 (-)	1011	WP_071551148.1	tetraacyldisaccharide 4'-kinase	-
BLL42_RS05570 (BLL42_05440)	-	1108526..1108954 (-)	429	WP_071551149.1	biopolymer transporter ExbD	-
BLL42_RS05575 (BLL42_05445)	exbB	1108951..1109586 (-)	636	WP_167368554.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
BLL42_RS05580 (BLL42_05450)	comA	1109697..1111928 (-)	2232	WP_071551150.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
BLL42_RS05585 (BLL42_05455)	-	1112064..1112579 (+)	516	WP_071551151.1	DUF2062 domain-containing protein	-
BLL42_RS05590 (BLL42_05460)	-	1112644..1113423 (-)	780	WP_071551152.1	ABC transporter permease	-
BLL42_RS05595 (BLL42_05465)	-	1113420..1114352 (-)	933	WP_071551153.1	ABC transporter ATP-binding protein	-
BLL42_RS05600 (BLL42_05470)	-	1114486..1115109 (-)	624	WP_071551154.1	glutathione S-transferase family protein	-
BLL42_RS05605 (BLL42_05475)	-	1115153..1115812 (-)	660	WP_071551155.1	transglutaminase family protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81378.53 Da
• Isoelectric Point: 9.1347

>NTDB_id=203565 BLL42_RS05580 WP_071551150.1 1109697..1111928(-) (comA) [Pseudomonas frederiksbergensis strain ERDD5:01]
MRTGMLALASGLLTLRFLPVLPPVGLLLLLPVLALMLLPFRTYPLAFFLFGFSWACASAHWALNDRLASGLDGQTRWVEG
RVVGLPQNTQGVVRFELADSESRRTRLPGLMRLAWYDGPAVNSGERWRLAVKLKRPTGLLNPQGFDYDAWLLAQRIGATG
SVKDGQLLRPAQGAWRDAVRQRLLAVDAQGRAGALAALVLGDGSGLSSEDWRVLQDTGTVHLLVISGQHIGLLAGMVYLL
IAGLARYGLWPQTLPWLPWACGMAFAAALGYGLLAGFEVPVRRACVMIGLVLLWRLWFRHLGAWWPLLLALNTVLLLEPL
ASLQPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPLLTLLGLPISLSGPLTNLLAVPWISLMVLPPAL
LGTLLLPLPYVGEGLLWLAGGLLDVLFSGLAWVAGRLPAWVAPVIPLWVWGISTFGAFLLLLPKGLPMRLLGWPMLLLIV
FPPLRTVPDGMAEIWQLDVGQGLAIVVRTRHHALLYDAGPRFGDFDLGERVVLPSLRKLGMHKLDVMLISHADADHAGGA
RSVSNGLPVAQVLSGDPEALPAELHAQACESGQRWEWDGVSFALWQWSEASESNQKSCVLQIEANGERLLLTGDIDARAE
QALLETPLAVATDWLQAPHHGSHSSSSMAFLMALAPKAVLISRGHDNSFGHPHPQVLARYRRLGMQVYDSAEQGALRLRL
GAFELPESLRQQPRFWRDPPSIK

Nucleotide

• Length: 2232 bp

>NTDB_id=203565 BLL42_RS05580 WP_071551150.1 1109697..1111928(-) (comA) [Pseudomonas frederiksbergensis strain ERDD5:01]
ATGCGCACAGGGATGTTGGCGCTCGCGTCGGGTCTGTTGACCTTGCGTTTTTTACCGGTGCTGCCACCGGTCGGGTTACT
GCTGTTGTTACCCGTACTGGCATTGATGCTGTTGCCGTTTCGCACATACCCGCTGGCGTTTTTTCTGTTCGGCTTCAGCT
GGGCGTGCGCCAGTGCGCACTGGGCGTTGAATGATCGTTTGGCATCGGGCCTCGACGGGCAAACCCGCTGGGTCGAGGGG
CGAGTTGTCGGCTTGCCGCAGAACACTCAAGGTGTGGTGCGTTTCGAGTTGGCTGATAGCGAGTCGCGGCGCACACGATT
GCCGGGTTTGATGCGGTTGGCCTGGTACGACGGTCCGGCTGTCAACAGTGGCGAGCGTTGGCGACTGGCGGTGAAATTGA
AGCGCCCCACGGGGTTGCTCAATCCGCAGGGCTTTGATTACGACGCCTGGCTGTTGGCGCAACGCATCGGTGCCACAGGC
AGCGTCAAAGATGGACAGTTACTCCGACCTGCGCAAGGGGCCTGGCGTGATGCTGTTCGCCAGCGCTTGCTGGCGGTCGA
TGCTCAAGGGCGCGCGGGAGCGTTGGCGGCGCTGGTGCTGGGTGACGGGTCCGGCCTGAGCAGCGAAGACTGGCGCGTAT
TGCAAGACACCGGCACCGTGCATTTACTGGTGATTTCCGGGCAGCACATTGGATTGCTGGCCGGGATGGTTTATCTGCTG
ATTGCCGGATTGGCGCGTTACGGGCTGTGGCCGCAGACGTTGCCCTGGCTGCCGTGGGCCTGCGGCATGGCATTCGCCGC
AGCGCTCGGCTATGGGCTGCTGGCTGGTTTCGAGGTGCCGGTGCGCAGAGCCTGCGTGATGATCGGTCTGGTGCTGTTAT
GGCGCCTGTGGTTTCGCCATCTGGGTGCCTGGTGGCCCTTGCTGCTGGCGTTGAATACGGTGTTGTTGCTTGAGCCGCTG
GCCAGTTTGCAACCGGGGTTCTGGCTGTCATTTGCAGCAGTGGCGGTGCTGATCTTTACCTTCGGCGGCCGCCTGGGCGC
CTGGCGCTGGTGGCAAACCTGGACGCGCGCGCAATGGCTGATCGCGATAGGTTTGTGTCCGCTGCTGACGCTGCTGGGTT
TGCCCATCAGCCTCAGTGGTCCGCTGACGAATCTGTTGGCGGTGCCCTGGATCAGCCTGATGGTGTTGCCCCCGGCCTTG
CTGGGGACGTTGCTGCTGCCGCTGCCTTATGTCGGCGAGGGGCTGTTGTGGCTCGCCGGCGGTTTGCTCGACGTTCTGTT
CAGCGGTCTGGCATGGGTGGCCGGGCGGCTACCGGCATGGGTTGCCCCGGTGATTCCCCTTTGGGTCTGGGGGATAAGTA
CTTTCGGCGCTTTTCTACTGTTGCTGCCCAAAGGCCTGCCCATGCGGTTGTTGGGCTGGCCGATGCTCCTGTTGATCGTG
TTCCCGCCGCTCAGAACCGTACCTGACGGCATGGCTGAAATCTGGCAGCTGGACGTCGGCCAGGGCCTGGCCATCGTGGT
CCGCACTCGCCATCACGCGTTGCTCTACGACGCCGGCCCGCGCTTCGGTGATTTCGATCTGGGCGAGCGGGTGGTGTTGC
CATCGTTGCGCAAGCTCGGTATGCACAAGCTGGATGTGATGCTGATCAGTCATGCCGATGCCGATCACGCGGGTGGCGCA
CGCTCGGTCTCAAATGGATTGCCGGTGGCGCAGGTACTCAGCGGTGATCCCGAAGCGCTGCCGGCCGAGTTGCACGCGCA
AGCCTGTGAGAGCGGTCAGCGCTGGGAGTGGGATGGTGTGAGTTTTGCGCTCTGGCAATGGTCCGAGGCGAGCGAAAGCA
ATCAGAAATCCTGCGTCCTGCAGATCGAAGCCAACGGCGAGCGTCTGTTGTTGACGGGCGACATCGACGCCCGAGCCGAG
CAGGCGTTGCTCGAAACTCCGCTGGCGGTCGCGACCGACTGGCTACAGGCGCCGCATCACGGCAGTCACAGCTCATCGTC
TATGGCCTTTCTCATGGCATTGGCACCCAAAGCCGTGCTGATTTCCCGCGGGCACGACAACTCGTTCGGTCATCCCCATC
CGCAAGTGCTGGCGCGCTATCGCCGGTTGGGCATGCAGGTATATGACAGCGCCGAGCAGGGCGCCTTGCGGTTGCGTCTG
GGGGCGTTTGAGCTGCCCGAATCGCTGCGCCAGCAACCCCGTTTCTGGCGCGACCCGCCGTCCATCAAATAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

3D structure

• AlphaFold DB: A0A1J0EGS8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.031	96.77	0.6
comA	Ralstonia pseudosolanacearum GMI1000	33.136	100	0.377