Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CGP93_RS08560 Genome accession   NZ_CP022897
Coordinates   1706565..1707167 (-) Length   200 a.a.
NCBI ID   WP_029753621.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701565..1712167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGP93_RS08540 (CGP93_01577) yajC 1703061..1703321 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  CGP93_RS08545 (CGP93_01578) tgt 1703340..1704479 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  CGP93_RS08550 (CGP93_01579) queA 1704502..1705527 (-) 1026 WP_001019170.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CGP93_RS08555 (CGP93_01580) ruvB 1705529..1706533 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CGP93_RS08560 (CGP93_01581) ruvA 1706565..1707167 (-) 603 WP_029753621.1 Holliday junction branch migration protein RuvA Machinery gene
  CGP93_RS08565 (CGP93_01582) - 1707181..1707636 (-) 456 WP_000368902.1 ACT domain-containing protein -
  CGP93_RS08570 (CGP93_01583) obgE 1707649..1708941 (-) 1293 WP_000496098.1 GTPase ObgE -
  CGP93_RS08575 (CGP93_01584) rpmA 1709557..1709841 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  CGP93_RS08580 (CGP93_01585) - 1709853..1710173 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  CGP93_RS08585 (CGP93_01586) rplU 1710179..1710487 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  CGP93_RS08590 (CGP93_01587) mreD 1710780..1711310 (-) 531 WP_031927662.1 rod shape-determining protein MreD -
  CGP93_RS08595 (CGP93_01588) mreC 1711310..1712152 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22288.49 Da        Isoelectric Point: 5.7132

>NTDB_id=203565 CGP93_RS08560 WP_029753621.1 1706565..1707167(-) (ruvA) [Staphylococcus aureus strain 128]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKYLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=203565 CGP93_RS08560 WP_029753621.1 1706565..1707167(-) (ruvA) [Staphylococcus aureus strain 128]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGTATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTTCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment