Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   BLD37_RS02215 Genome accession   NZ_CP017868
Coordinates   408062..409624 (+) Length   520 a.a.
NCBI ID   WP_071314949.1    Uniprot ID   A0A5T1ZTJ5
Organism   Campylobacter coli strain MG1116     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 403062..414624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLD37_RS02195 (BLD37_02195) ctsR 405180..405491 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  BLD37_RS02200 (BLD37_02200) ctsD 405469..406887 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  BLD37_RS02205 (BLD37_02205) ctsP 406880..407476 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  BLD37_RS02210 (BLD37_02210) - 407473..408069 (+) 597 WP_002779313.1 CDC27 family protein -
  BLD37_RS02215 (BLD37_02215) ctsE 408062..409624 (+) 1563 WP_071314949.1 GspE/PulE family protein Machinery gene
  BLD37_RS02220 (BLD37_02220) ctsF 409611..410786 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  BLD37_RS02225 (BLD37_02225) - 410783..411547 (-) 765 WP_071314950.1 TSUP family transporter -
  BLD37_RS02230 (BLD37_02230) - 411550..412314 (-) 765 WP_002781156.1 TIGR02757 family protein -
  BLD37_RS02235 (BLD37_02235) flgK 412331..414157 (-) 1827 WP_002779264.1 flagellar hook-associated protein FlgK -
  BLD37_RS02240 (BLD37_02240) - 414167..414601 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59862.45 Da        Isoelectric Point: 5.6204

>NTDB_id=203387 BLD37_RS02215 WP_071314949.1 408062..409624(+) (ctsE) [Campylobacter coli strain MG1116]
MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYSTLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQFNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKVKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=203387 BLD37_RS02215 WP_071314949.1 408062..409624(+) (ctsE) [Campylobacter coli strain MG1116]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACCCTTGAGCAAATTGATCGTGAGCATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTCTACTTTAGAGGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGCGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACCAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGTATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGCGATATACATATAGAAGCAAGAGAAAATGATACTTTGATAAGATTTAGAGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGTTTAATGTTGCAG
AATCAAGAAAGGCTCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGACTTGAATTTAATAATGCCCTAAGAGCCAT
TTTAAGACAAGATCCTGATATTATCATGGTAGGAGAAATCAGAGATGAGGAGAGCCTTGATATAGCGATTAAGGCTTCCT
TAACGGGGCACTTGCTTTTAAGTACTTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTGTCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGTAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(46-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1ZTJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

66.992

98.462

0.66
  pilB Acinetobacter baylyi ADP1

35.536

100

0.383
  pilB Legionella pneumophila strain ERS1305867

40.206

93.269

0.375

Multiple sequence alignment