Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | BLD37_RS02220 | Genome accession | NZ_CP017868 |
| Coordinates | 409611..410786 (+) | Length | 391 a.a. |
| NCBI ID | WP_002781160.1 | Uniprot ID | A0A0Q2ISE7 |
| Organism | Campylobacter coli strain MG1116 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 404611..415786
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLD37_RS02195 (BLD37_02195) | ctsR | 405180..405491 (+) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
| BLD37_RS02200 (BLD37_02200) | ctsD | 405469..406887 (+) | 1419 | WP_002779315.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| BLD37_RS02205 (BLD37_02205) | ctsP | 406880..407476 (+) | 597 | WP_002779314.1 | ATP-binding protein | Machinery gene |
| BLD37_RS02210 (BLD37_02210) | - | 407473..408069 (+) | 597 | WP_002779313.1 | CDC27 family protein | - |
| BLD37_RS02215 (BLD37_02215) | ctsE | 408062..409624 (+) | 1563 | WP_071314949.1 | GspE/PulE family protein | Machinery gene |
| BLD37_RS02220 (BLD37_02220) | ctsF | 409611..410786 (+) | 1176 | WP_002781160.1 | type II secretion system F family protein | Machinery gene |
| BLD37_RS02225 (BLD37_02225) | - | 410783..411547 (-) | 765 | WP_071314950.1 | TSUP family transporter | - |
| BLD37_RS02230 (BLD37_02230) | - | 411550..412314 (-) | 765 | WP_002781156.1 | TIGR02757 family protein | - |
| BLD37_RS02235 (BLD37_02235) | flgK | 412331..414157 (-) | 1827 | WP_002779264.1 | flagellar hook-associated protein FlgK | - |
| BLD37_RS02240 (BLD37_02240) | - | 414167..414601 (-) | 435 | WP_002779263.1 | flagellar protein FlgN | - |
| BLD37_RS02245 (BLD37_02245) | flgM | 414643..414840 (-) | 198 | WP_002779262.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| BLD37_RS02250 (BLD37_02250) | - | 414903..415244 (-) | 342 | WP_002784057.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 45518.35 Da Isoelectric Point: 9.4461
>NTDB_id=203388 BLD37_RS02220 WP_002781160.1 409611..410786(+) (ctsF) [Campylobacter coli strain MG1116]
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQKASFKRLDDARFILFFQELSLLCEVGISIKDALKEL
DKIYSHKMIAKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIALILFLTLFLYRKYYFFSYFCDSL
LLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEAFKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLV
FSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF
Nucleotide
Download Length: 1176 bp
>NTDB_id=203388 BLD37_RS02220 WP_002781160.1 409611..410786(+) (ctsF) [Campylobacter coli strain MG1116]
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
ATGAAGCTTTATGAGCTCGAGATTAAAGGCAAAACAAAACAGACAAAGCATTTAAGGGCTAAAAATTTAAACGAAGCTCA
AGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATACAAAAAGCAAGTTTTAAAAGATTAGATGATG
CAAGATTTATCCTTTTCTTTCAAGAATTATCTTTGCTTTGCGAAGTAGGAATCAGCATAAAAGATGCTTTAAAGGAGCTT
GATAAAATATATTCTCACAAGATGATTGCCAAGCTTTGCGATAATTTAAATTTAGGACAAAATTTAAGCCTTGCTTTTGA
AAATGCAAATTTTGGACTTACTCATGCGGAATTAGCCCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAATTT
TCATGCAAATTTCAAGATTAAGACAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTGATT
GTTTTTTTAAGTGTGTGCGCGGCTTTTGTTTTACTCATGCTTTTTGTTGTGCCTAATTTTAAAGATTTATTTGAGGATTT
AAATTTAGCCTTACCCTTTATAACCGAGCTTATAATTTATATTTATAATTTTTTGGATAAGTATATTTTGCTTGTGTTTT
GTTTGATCGCACTTATTTTATTTCTTACTTTATTTTTGTATAGAAAATATTATTTCTTTTCATATTTTTGTGATAGCTTG
CTTTTAAAACTTCCTTTGTTGTCTAAATTTATTATTTATCAGCAAAATTATTCTTTTTTTATGATTTTCTCTTTACTTTT
AAAAAGCGGCATTTCTCTTTTGGAAGCTTTTAAATTAGCCACTTTGGCCTTAAATAATAAAAAGGTATTATTGTATTATC
AAGAAATTAGAACATTTATGGATTCTGGCCTTGAAATAAGTCACGCCTTTAAAAAAGTAGATCTTTTTGATCCTTTGGTT
TTTTCTATGTTGAGTATAGCTATGAAAAGTTCTAAGCTTGAGTTTTTGAGCGAGGAGATTGCGAAATATTATAAAAACAA
AAGTGAAAATTTAATGGACAAGTTTTTAAGCTTTTTAGAACCTATAATGACTTTATGGGTTGCGATTTTAGTATTGTTTT
TAGCACTTGGAATTTTTTTACCTATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
60.66 |
100 |
0.611 |