Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   DN94_09365 Genome accession   CP007565
Coordinates   1836200..1837270 (+) Length   356 a.a.
NCBI ID   AHX75815.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1831200..1842270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_09340 - 1832361..1834940 (+) 2580 AHX75813.1 copper ABC transporter permease -
  DN94_09360 - 1835519..1835998 (-) 480 AHX75814.1 rRNA methyltransferase -
  DN94_09365 htrA 1836200..1837270 (+) 1071 AHX75815.1 serine protease Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37541.11 Da        Isoelectric Point: 9.2856

>NTDB_id=20318 DN94_09365 AHX75815.1 1836200..1837270(+) (htrA) [Streptococcus agalactiae strain 138spar]
MKKKLVSSLLKCSLIIIVSFAGGAFASFVMNHNDNIPNGGVTKTSKVNYNNITPTTKAVKKVQNSVVSVINYKQQESRSD
LSDFYSHFFGNQGGNTDKGLQVYGEGSGVIYKKDGKNAYVVTNNHVIDGAKQIEIQLADGSKAVGKLVGSDTYSDLAVVK
IPSDKVSNIAEFADSSKLNIGETAIAIGSPLGTEYANSVTQGIVSSLKRTVTMTNEEGQTVSTNAIQTDAAINPGNSGGA
LINIEGQVIGINSSKISSTSNQTSGQSSGNSVEGMGFAIPSNDVVKIINQLESNGQVERPALGISMAGLSDLQSLLYGHQ
VGDSITVTFYRGENKQTITIKLTKTSKDLAKQRANN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=20318 DN94_09365 AHX75815.1 1836200..1837270(+) (htrA) [Streptococcus agalactiae strain 138spar]
GTGAAAAAAAAATTAGTCTCATCACTTCTAAAGTGTTCTCTAATCATTATTGTTAGCTTTGCTGGTGGAGCATTTGCTAG
TTTTGTCATGAATCATAATGACAATATTCCAAATGGTGGTGTCACTAAAACTAGTAAAGTAAATTATAATAACATAACGC
CTACAACAAAAGCTGTTAAAAAGGTACAAAATAGTGTTGTTTCTGTTATCAATTATAAACAACAAGAGAGTCGTTCTGAC
CTATCAGACTTCTATAGTCATTTTTTTGGTAATCAGGGGGGCAACACTGATAAGGGCTTACAAGTTTACGGTGAAGGCTC
TGGAGTCATCTATAAAAAAGATGGTAAAAATGCCTATGTTGTCACTAATAACCACGTCATTGATGGGGCTAAACAAATTG
AAATTCAACTAGCTGATGGCTCAAAAGCAGTTGGGAAACTTGTTGGGTCAGATACCTACTCTGATTTAGCCGTCGTCAAA
ATTCCATCAGATAAAGTTTCAAATATTGCAGAATTTGCTGATTCATCAAAACTCAACATTGGTGAAACTGCTATAGCGAT
CGGAAGCCCTCTTGGAACTGAGTATGCAAATTCTGTAACTCAAGGTATTGTATCTAGTTTAAAAAGAACTGTAACAATGA
CTAATGAAGAAGGACAAACAGTTTCTACAAATGCTATCCAGACTGATGCTGCTATCAATCCTGGTAATTCAGGTGGAGCA
CTTATCAATATTGAAGGACAGGTTATTGGAATTAATTCTAGTAAAATTTCTTCTACATCAAATCAAACCTCAGGACAATC
GTCAGGAAATAGCGTTGAAGGTATGGGATTTGCCATTCCTTCAAATGATGTTGTTAAGATTATCAATCAACTTGAGAGTA
ACGGACAAGTAGAGAGACCTGCTCTAGGTATTTCTATGGCTGGATTAAGTGATTTACAAAGTTTACTCTATGGCCACCAG
GTAGGAGATTCCATAACAGTAACCTTTTATCGTGGTGAAAATAAACAAACAATCACTATAAAACTTACTAAAACTAGTAA
AGATTTAGCTAAACAACGAGCAAATAACTAA

Domains

Predicted by InterproScan.

Trypsin-like peptidase domain (Trypsin_2)

(106-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

54.453

100

0.601
  htrA Streptococcus gordonii str. Challis substr. CH1

48.878

100

0.551
  htrA Streptococcus pneumoniae Rx1

46.929

100

0.537
  htrA Streptococcus pneumoniae TIGR4

46.929

100

0.537
  htrA Streptococcus pneumoniae D39

46.929

100

0.537
  htrA Streptococcus pneumoniae R6

46.929

100

0.537
  htrA Streptococcus mitis NCTC 12261

47.99

100

0.537

Multiple sequence alignment