Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BG256_RS04190 Genome accession   NZ_CP017811
Coordinates   852049..852846 (-) Length   265 a.a.
NCBI ID   WP_071162874.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NML-Hia-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 847049..857846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG256_RS04160 (BG256_04160) nfuA 847896..848492 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  BG256_RS04165 (BG256_04165) - 848568..849254 (-) 687 WP_071162871.1 ComF family protein -
  BG256_RS04170 (BG256_04170) comE 849267..850604 (-) 1338 WP_071162872.1 type IV pilus secretin PilQ family protein Machinery gene
  BG256_RS04175 (BG256_04175) comD 850614..851027 (-) 414 WP_005693727.1 pilus assembly protein PilP Machinery gene
  BG256_RS04180 (BG256_04180) comC 851024..851545 (-) 522 WP_048951462.1 competence protein ComC Machinery gene
  BG256_RS04185 (BG256_04185) comB 851542..852048 (-) 507 WP_071162873.1 competence protein ComB Machinery gene
  BG256_RS04190 (BG256_04190) comA 852049..852846 (-) 798 WP_071162874.1 competence protein ComA Machinery gene
  BG256_RS04195 (BG256_04195) - 852944..855538 (+) 2595 WP_071162875.1 penicillin-binding protein 1A -
  BG256_RS04200 (BG256_04200) - 855611..856456 (+) 846 WP_071162876.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  BG256_RS04205 (BG256_04205) - 856609..856938 (+) 330 WP_071162877.1 YbaB/EbfC family nucleoid-associated protein -
  BG256_RS04210 (BG256_04210) recR 857071..857673 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31527.87 Da        Isoelectric Point: 5.9495

>NTDB_id=203131 BG256_RS04190 WP_071162874.1 852049..852846(-) (comA) [Haemophilus influenzae strain NML-Hia-1]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSSAQTYLQDFQPFNINILDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=203131 BG256_RS04190 WP_071162874.1 852049..852846(-) (comA) [Haemophilus influenzae strain NML-Hia-1]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
GCGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

99.245

100

0.992
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment