Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | BG256_RS04175 | Genome accession | NZ_CP017811 |
| Coordinates | 850614..851027 (-) | Length | 137 a.a. |
| NCBI ID | WP_005693727.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain NML-Hia-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 845614..856027
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BG256_RS04145 (BG256_04145) | - | 845996..846268 (-) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
| BG256_RS04150 (BG256_04150) | - | 846408..846998 (-) | 591 | WP_071162869.1 | YjaG family protein | - |
| BG256_RS04155 (BG256_04155) | nudC | 847034..847828 (-) | 795 | WP_071162870.1 | NAD(+) diphosphatase | - |
| BG256_RS04160 (BG256_04160) | nfuA | 847896..848492 (-) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| BG256_RS04165 (BG256_04165) | - | 848568..849254 (-) | 687 | WP_071162871.1 | ComF family protein | - |
| BG256_RS04170 (BG256_04170) | comE | 849267..850604 (-) | 1338 | WP_071162872.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| BG256_RS04175 (BG256_04175) | comD | 850614..851027 (-) | 414 | WP_005693727.1 | pilus assembly protein PilP | Machinery gene |
| BG256_RS04180 (BG256_04180) | comC | 851024..851545 (-) | 522 | WP_048951462.1 | competence protein ComC | Machinery gene |
| BG256_RS04185 (BG256_04185) | comB | 851542..852048 (-) | 507 | WP_071162873.1 | competence protein ComB | Machinery gene |
| BG256_RS04190 (BG256_04190) | comA | 852049..852846 (-) | 798 | WP_071162874.1 | competence protein ComA | Machinery gene |
| BG256_RS04195 (BG256_04195) | - | 852944..855538 (+) | 2595 | WP_071162875.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15681.82 Da Isoelectric Point: 4.5625
>NTDB_id=203128 BG256_RS04175 WP_005693727.1 850614..851027(-) (comD) [Haemophilus influenzae strain NML-Hia-1]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=203128 BG256_RS04175 WP_005693727.1 850614..851027(-) (comD) [Haemophilus influenzae strain NML-Hia-1]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTGCCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAACAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
100 |
100 |
1 |
| comD | Haemophilus influenzae 86-028NP |
99.27 |
100 |
0.993 |